Evidence map›Paper›PMID 35980033›Full record

ArticlemBio2022

A Conundrum of r-Protein Stability: Unbalanced Stoichiometry of r-Proteins during Stationary Phase in Escherichia coli.

Kaspar Reier, Petri-Jaan Lahtvee, Aivar Liiv, Jaanus Remme

Abstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Phase-Specific Antibiotic Resistance Mechanisms in anbioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. Lessons from RatA: Why the Basics in Molecular Biology Are Still Crucial!International journal of molecular sciences · 2025
    Article
  8. Article
  9. Article
  10. SILAC analysis ofMicrobiology resource announcements · 2024
    Article
  11. Extraribosomal Functions of Bacterial Ribosomal Proteins-An Update, 2023.International journal of molecular sciences · 2024
    Review
  12. Article
  13. Ribosome Protein Composition Mediates Translation during theInternational journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kaspar ReierInstitute of Molecular and Cell Biology, University of Tartugrid.10939.32, Tartu, Estonia.
Petri-Jaan LahtveeDepartment of Chemistry and Biotechnology, Tallinn University of Technologygrid.6988.f, Tallinn, Estonia.ORCID 0000-0002-3327-3190
Aivar LiivInstitute of Molecular and Cell Biology, University of Tartugrid.10939.32, Tartu, Estonia.
Jaanus RemmeInstitute of Molecular and Cell Biology, University of Tartugrid.10939.32, Tartu, Estonia.ORCID 0000-0002-4011-6580

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial ribosomes are composed of three rRNA and over 50 ribosomal protein (r-protein) molecules. r-proteins are essential for ribosome assembly and structural stability and also participate in almost all ribosome functions. Ribosomal components are present in stoichiometric amounts in the mature 70S ribosomes during exponential and early stationary growth phases. Ribosomes are degraded in stationary phase; however, the stability and fate of r-proteins during stationary growth phase are not known. In this study, we report a quantitative analysis of ribosomal components during extended stationary-phase growth in Escherichia coli. We show that (i) the quantity of ribosomes per cell mass decreases in stationary phase, (ii) 70S ribosomes contain r-proteins in stoichiometric amounts, (iii) 30S subunits are degraded faster than 50S subunits, (iv) the quantities of 21 r-proteins in the total proteome decrease during 14 days (short-lived r-proteins) concomitantly with the reduction of cellular RNA, and (e) 30 r-proteins are stable and form a pool of free r-proteins (stable r-proteins). Thus, r-proteins are present in nonstoichiometric amounts in the proteome of E. coli during the extended stationary phase.

Indexed as

Escherichia coliEscherichia coli ProteinsProtein StabilityProteomeRibosomal ProteinsRNA, RibosomalEscherichia coli ProteinsProteomeRibosomal ProteinsRNA, Ribosomalproteomicsribosomal proteinsribosomesrRNAstationary phase

Identifiers

PMID35980033
PMCPMC9601097

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.