Evidence map›Paper›PMID 35979346›Full record

ArticleFrontiers in immunology2022

Application value of blood metagenomic next-generation sequencing in patients with connective tissue diseases.

Rui Su, Huanhuan Yan, Na Li, Tingting Ding, Baochen Li, Yuhuan Xie, Chong Gao, Xiaofeng Li, Caihong Wang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Rui SuDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Huanhuan YanDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Na LiDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Tingting DingDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Baochen LiDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Yuhuan XieDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Chong GaoPathology, Joint Program in Transfusion Medicine, Brigham and Women's Hospital/Children's Hospital Boston, Harvard Medical School, Boston, MA, United States.
Xiaofeng LiDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Caihong WangDepartment of Rheumatology, the Second Hospital of Shanxi Medical University, Taiyuan, China.
Second Hospital of Shanxi Medical University · CNShanxi Medical University · CNHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: This study aimed to analyze the application value of blood metagenomic next-generation sequencing (mNGS) in patients with connective tissue diseases (CTDs) to provide a reference for infection diagnosis and guidance for treatment. Methods: A total of 126 CTD patients with suspected infections who were hospitalized in the Department of Rheumatology, the Second Hospital of Shanxi Medical University from January 2020 to December 2021 were enrolled in this study. We retrospectively reviewed the results of mNGS and conventional diagnostic tests (CDTs). Results: Systemic lupus erythematosus (SLE) and polymyositis/dermatomyositis (DM/PM) had the highest incidence of infections. The positive pathogen detection rates of mNGS were higher than those of CDT. The virus infections are the most common type in CTD patients with single or mixed infection, especially Human gammaherpesvirus 4 (EBV), Human betaherpesvirus 5 (CMV), and Human alphaherpesvirus 1. The incidence of prokaryote and eukaryote infections is secondary to viruses. Bloodstream infections of rare pathogens such as Conclusion: mNGS has incremental application value in patients with CTD suspected of co-infection. It has a high sensitivity, and a wide detection range for microorganisms in CTD patients. Furthermore, the high incidence of opportunistic virus infections in CTD patients should be of sufficient concern.

Indexed as

CoinfectionConnective Tissue DiseasesHerpesvirus 4, HumanHigh-Throughput Nucleotide SequencingHumansMetagenomicsRetrospective StudiesCMV (citomegalovirus)connective tissue diseasesEBV - Epstein-Barr Virusinfectionmetagenomic next-generation sequencingvirus

Identifiers

PMID35979346
PMCPMC9376218
OpenAlexW4289131287

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.