Evidence map›Paper›PMID 35979088›Full record

ArticleFrontiers in cellular and infection microbiology2022

Metagenomic next-generation sequencing for the diagnosis of pulmonary aspergillosis in non-neutropenic patients: a retrospective study.

Shujun Bao, Huihui Song, Yang Chen, Caiming Zhong, Hao Tang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Diagnostic criteria for invasive pulmonary aspergillosis in COPD patients.American journal of respiratory and critical care medicine · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Beyond detection: quantitative interpretation ofFrontiers in cellular and infection microbiology · 2026
    Article
  7. Article
  8. Review
  9. Observational
  10. Invasive Aspergillosis in the Intensive Care Unit.Journal of fungi (Basel, Switzerland) · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Metagenomic next-generation sequencing for detectingFrontiers in cellular and infection microbiology · 2023
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shujun BaoDepartment of Respiratory and Critical Care Medicine, Second Affiliated Hospital of Naval Medical University, Shanghai, China.
Huihui SongDepartment of Respiratory and Critical Care Medicine, Second Affiliated Hospital of Naval Medical University, Shanghai, China.
Yang ChenDepartment of Respiratory and Critical Care Medicine, Second Affiliated Hospital of Naval Medical University, Shanghai, China.
Caiming ZhongDepartment of Respiratory and Critical Care Medicine, Second Affiliated Hospital of Naval Medical University, Shanghai, China.
Hao TangDepartment of Respiratory and Critical Care Medicine, Second Affiliated Hospital of Naval Medical University, Shanghai, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to obtain further in-depth information on the value of metagenomic next-generation sequencing (mNGS) for diagnosing pulmonary aspergillosis in non-neutropenic patients. We did a retrospective study, in which 33 non-neutropenic patients were included, of which 12 were patients with pulmonary aspergillosis and 21 were diagnosed with non-pulmonary aspergillosis. Fungi and all other co-pathogens in bronchoalveolar lavage fluid (BALF) (27 cases), blood (6 cases), and/or pleural fluid (1 case) samples were analyzed using mNGS. One of the patients submitted both BALF and blood samples. We analyzed the clinical characteristics, laboratory tests, and radiologic features of pulmonary aspergillosis patients and compared the diagnostic accuracy, including sensitivity, specificity, positive predictive value, and negative predictive value of mNGS with conventional etiological methods and serum (1,3)-β-D-glucan. We also explored the efficacy of mNGS in detecting mixed infections and co-pathogens. We further reviewed modifications of antimicrobial therapy for patients with pulmonary aspergillosis according to the mNGS results. Finally, we compared the detection of

Indexed as

AspergillosisMetagenomicsAspergillusFungiHigh-Throughput Nucleotide SequencingHumansRetrospective StudiesSensitivity and Specificityaspergillusdiagnosismetagenomic next-generation sequencingnon-neutropenic patientspulmonary aspergillosis

Identifiers

PMID35979088
PMCPMC9376315
OpenAlexW4289131079

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.