Evidence map›Paper›PMID 35978902›Full record

ArticleComputational intelligence and neuroscience2022

m6A-Related lncRNAs Predict Overall Survival of Patients and Regulate the Tumor Immune Microenvironment in Osteosarcoma.

Yikang Bi, Depeng Meng, Ma Wan, Ning Xu, Yafeng Xu, Kaixuan Yuan, Pengcheng Liu, Hao Fang, Hai Hu, Shenghui Lan

Open access · hybridAbstract read
In one paragraph

Article in Computational intelligence and neuroscience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
  3. Epigenetic Modulation of Estrogen Receptor Signaling in Ovarian Cancer.International journal of molecular sciences · 2024
    Review
  4. Non-coding RNA-Mediated N6-Methyladenosine (mNon-coding RNA research · 2024
    Review
  5. Review
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yikang BiDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Depeng MengDepartment of Orthopedics, Changzheng Hospital, Naval Military Medical University, Shanghai 200074, China.
Ma WanDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Ning XuDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Yafeng XuDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Kaixuan YuanDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Pengcheng LiuDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Hao FangDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Hai HuDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.
Shenghui LanDepartment of Orthopaedics, The Eighth People's Hospital, Jiangsu University, Shanghai 200235, China.ORCID https://orcid.org/0000-0002-0630-9477
Jiangsu University · CNShanghai Changzheng Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: m6A-related lncRNAs have demonstrated great potential tumor diagnostic and therapeutic targets. The goal of this work was to find m6A-regulated lncRNAs in osteosarcoma patients. Method: The Cancer Genome Atlas (TCGA) database was used to retrieve RNA sequencing and medical information from osteosarcoma sufferers. The Pearson's correlation test was used to identify the m6A-related lncRNAs. A risk model was built using univariate and multivariable Cox regression analysis. Kaplan-Meier survival analysis and receiver functional requirements were used to assess the risk model's performance (ROC). By using the CIBERSORT method, the associations between the relative risks and different immune cell infiltration were investigated. Lastly, the bioactivities of high-risk and low-risk subgroups were investigated using Gene Set Enrichment Analysis (GSEA). Result: A total of 531 m6A-related lncRNAs were obtained from TCGA. Seven lncRNAs have demonstrated prognostic values. A total of 88 OS patients were separated into cluster 1, cluster 2, and cluster 3. The overall survival rate of OS patients in cluster 3 was more favorable than that of those in cluster 1 and cluster 2. The average Stromal score was much higher in cluster 1 than in cluster 2 and cluster 3 ( Conclusion: Our investigation showed that m6A-related lncRNAs remained tightly connected to the immunological microenvironment of osteosarcoma tumors, potentially influencing carcinogenesis and development. The immune microenvironment and immune-related biochemical pathways can be changed by regulating the transcription of M6A modulators or lncRNAs. In addition, we looked for risk-related signaling of m6A-related lncRNAs in osteosarcomas and built and validated the risk prediction system. The findings of our current analysis will facilitate the assessment of outcomes and the development of immunotherapies for sufferers of osteosarcomas.

Indexed as

OsteosarcomaRNA, Long NoncodingGene Expression ProfilingHumansTumor MicroenvironmentRNA, Long Noncoding

Identifiers

PMID35978902
PMCPMC9377863
OpenAlexW4290694729

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.