Evidence map›Paper›PMID 35978488›Full record

ArticleProteins2023

Crystal structure of Methanococcus jannaschii dihydroorotase.

Jacqueline Vitali, Jay C Nix, Haley E Newman, Michael J Colaneri

Open access · hybridAbstract read
In one paragraph

Article in Proteins, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Crystal structure of Methanococcus jannaschii dihydroorotase with substrate bound.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jacqueline VitaliDepartment of Physics, Cleveland State University, Cleveland, Ohio, USA.ORCID 0000-0003-3029-8496
Jay C NixMolecular Biology Consortium, Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-4041-4975
Haley E NewmanDepartment of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, Ohio, USA.
Michael J ColaneriDepartment of Chemistry and Physics, The State University of New York College, Old Westbury, New York, USA.ORCID 0000-0001-6462-7919
Cleveland State University · USLawrence Berkeley National Laboratory · USSUNY Old Westbury · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
CANCER RESEARCH TRAINING PROGRAMT32CA009615 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Gregory L Beatty, MICHAEL D HOGARTY · 1988 to 2026
$10.4M
Structural Studies of the Pyrimidine PathwayR15GM071512 · NIGMS · CLEVELAND STATE UNIVERSITY · PI VITALI, JACQUELINE · 2004 to 2004
$210k
NCI NIH HHS T32 CA009615NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R15 GM071512
6 · The paper itself

Abstract

In this paper, we report the structural analysis of dihydroorotase (DHOase) from the hyperthermophilic and barophilic archaeon Methanococcus jannaschii. DHOase catalyzes the reversible cyclization of N-carbamoyl-l-aspartate to l-dihydroorotate in the third step of de novo pyrimidine biosynthesis. DHOases form a very diverse family of enzymes and have been classified into types and subtypes with structural similarities and differences among them. This is the first archaeal DHOase studied by x-ray diffraction. Its structure and comparison with known representatives of the other subtypes help define the structural features of the archaeal subtype. The M. jannaschii DHOase is found here to have traits from all subtypes. Contrary to expectations, it has a carboxylated lysine bridging the two Zn ions in the active site, and a long catalytic loop. It is a monomeric protein with a large β sandwich domain adjacent to the TIM barrel. Loop 5 is similar to bacterial type III and the C-terminal extension is long.

Indexed as

DihydroorotaseMethanocaldococcusAspartic AcidCatalysisCatalytic DomainAspartic AcidDihydroorotasecrystal structuredihydroorotaseMethanococcus jannaschiipyrimidine biosynthesis

Identifiers

PMID35978488
PMCPMC9771888
OpenAlexW4292178794

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.