Evidence map›Paper›PMID 35974364›Full record

ArticleJournal of hematology & oncology2022

Genome-wide profiling of 5-hydroxymethylcytosines in circulating cell-free DNA reveals population-specific pathways in the development of multiple myeloma.

Brian C-H Chiu, Zhou Zhang, Benjamin A Derman, Jason Karpus, Liangzhi Luo, Sheng Zhang, Spencer S Langerman, Madina Sukhanova, Parveen Bhatti, Andrzej Jakubowiak and 2 more

Open access · goldAbstract readLetter
In one paragraph

Article in Journal of hematology & oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. [Progress in metabolomics of multiple myeloma].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2025
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. A 5-Hydroxymethylcytosine-Based Noninvasive Model for Early Detection of Colorectal Carcinomas and Advanced Adenomas: The METHOD-2 Study.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Observational
  10. Review
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Brian C-H Chiu *Department of Public Health Sciences, The University of Chicago, Chicago, IL, 60637, USA. bchiu@uchicago.edu.
Zhou ZhangDepartment of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.
Benjamin A DermanSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, 60637, USA.
Jason KarpusDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA.
Liangzhi LuoDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA.
Sheng ZhangDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA.
Spencer S LangermanDepartment of Public Health Sciences, The University of Chicago, Chicago, IL, 60637, USA.
Madina SukhanovaDepartment of Pathology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Parveen BhattiDepartment of Cancer Control Research, BC Cancer Research Institute, Vancouver, BC, V5Z1L3 0611, Canada.
Andrzej JakubowiakSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, 60637, USA.
Chuan HeDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA.
Wei Zhang *Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA. wei.zhang1@northwestern.edu.
University of Chicago · USNorthwestern University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multiple myeloma (MM) and its precursors monoclonal gammopathy of undetermined significance (MGUS) and smoldering myeloma (SMM) are 2-3 times more common in African Americans (AA) than European Americans (EA). Although epigenetic changes are well recognized in the context of myeloma cell biology, the contribution of 5-hydroxymethylcytosines (5hmC) to racial disparities in MM is unknown. Using the 5hmC-Seal and next-generation sequencing, we profiled genome-wide 5hmC in circulating cell-free DNA (cfDNA) from 342 newly diagnosed patients with MM (n = 294), SMM (n = 18), and MGUS (n = 30). We compared differential 5hmC modifications between MM and its precursors among 227 EA and 115 AA patients. The captured 5hmC modifications in cfDNA were found to be enriched in B-cell and T-cell-derived histone modifications marking enhancers. Of the top 500 gene bodies with differential 5hmC levels between MM and SMM/MGUS, the majority (94.8%) were distinct between EA and AA and enriched with population-specific pathways, including amino acid metabolism in AA and mainly cancer-related signaling pathways in EA. These findings improved our understanding of the epigenetic contribution to racial disparities in MM and suggest epigenetic pathways that could be exploited as novel preventive strategies in high-risk populations.

Indexed as

Cell-Free Nucleic AcidsMonoclonal Gammopathy of Undetermined SignificanceMultiple Myeloma5-MethylcytosineHumans5-hydroxymethylcytosine5-MethylcytosineCell-Free Nucleic Acids5-hydroxymethylcytosineEpigenetic modificationMultiple myelomaRacial disparity

Identifiers

PMID35974364
PMCPMC9380317
OpenAlexW4292181055

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.