Evidence map›Paper›PMID 35974106›Full record

ArticleNature communications2022

A new gene set identifies senescent cells and predicts senescence-associated pathways across tissues.

Dominik Saul, Robyn Laura Kosinsky, Elizabeth J Atkinson, Madison L Doolittle, Xu Zhang, Nathan K LeBrasseur, Robert J Pignolo, Paul D Robbins, Laura J Niedernhofer, Yuji Ikeno and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 740 papers.

0numbers the graph read from it
0cells of the map it votes in
740citing papers in PubMed
98.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

740 citing papers in PubMed, 894 citations in OpenAlex.

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  14. Age-associated Autoimmunity Driven by T cell Immunosenescence.bioRxiv : the preprint server for biology · 2026
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680 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Dominik SaulDivision of Endocrinology, Mayo Clinic, Rochester, MN, 55905, USA. saul.dominik@mayo.edu.ORCID 0000-0002-0673-3710
Robyn Laura KosinskyDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0003-2869-7762
Elizabeth J AtkinsonDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA.
Madison L DoolittleDivision of Endocrinology, Mayo Clinic, Rochester, MN, 55905, USA.
Xu ZhangRobert and Arlene Kogod Center on Aging, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0002-9784-0481
Nathan K LeBrasseurRobert and Arlene Kogod Center on Aging, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0002-2002-0418
Robert J PignoloDivision of Endocrinology, Mayo Clinic, Rochester, MN, 55905, USA.
Paul D RobbinsInstitute on the Biology of Aging and Metabolism, Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0003-1068-7099
Laura J NiedernhoferInstitute on the Biology of Aging and Metabolism, Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0002-1074-1385
Yuji IkenoDepartment of Pathology, University of Texas Health, San Antonio, TX, USA.
Diana JurkRobert and Arlene Kogod Center on Aging, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0003-4486-0857
João F PassosRobert and Arlene Kogod Center on Aging, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0001-8765-1890
LaTonya J HicksonDivision of Nephrology and Hypertension, Mayo Clinic, Jacksonville, FL, USA.
Ailing XueRobert and Arlene Kogod Center on Aging, Mayo Clinic, Rochester, MN, 55905, USA.
David G MonroeDivision of Endocrinology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0002-4818-0114
Tamara TchkoniaRobert and Arlene Kogod Center on Aging, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0003-4623-7145
James L KirklandRobert and Arlene Kogod Center on Aging, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0003-1676-4905
Joshua N FarrDivision of Endocrinology, Mayo Clinic, Rochester, MN, 55905, USA. farr.joshua@mayo.edu.ORCID 0000-0002-3179-6414
Sundeep KhoslaDivision of Endocrinology, Mayo Clinic, Rochester, MN, 55905, USA. khosla.sundeep@mayo.edu.ORCID 0000-0002-2936-4372
Mayo Clinic in Florida · USMayo Clinic in Arizona · USMayo Clinic · USUniversity of Minnesota · USThe University of Texas Health Science Center at San Antonio · US

Funding

TRANSGENIC COREP30AG013319 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JAMES FLOYD NELSON · 1995 to 2026
$30.6M
Targeting Cellular Senescence to Extend HealthspanP01AG062413 · NIA · MAYO CLINIC ROCHESTER · PI Diana Jurk · 2019 to 2026
$28.7M
Effect of Aging on Preadipocyte DifferentiationR37AG013925 · NIA · MAYO CLINIC ROCHESTER · PI KIRKLAND, JAMES L. · 2016 to 2025
$6.6M
Translational Geroscience NetworkR33AG061456 · NIA · MAYO CLINIC ROCHESTER · PI JAMES L. KIRKLAND, STEPHEN B. KRITCHEVSKY · 2019 to 2026
$6.2M
Senescence and Growth Differentiation Factors as Modifiers of AgingR01AG055529 · NIA · MAYO CLINIC ROCHESTER · PI LEBRASSEUR, NATHAN K · 2018 to 2022
$3.1M
Defining the interactions of senescent immune cells and skeletal cellsR01AG076515 · NIA · MAYO CLINIC ROCHESTER · PI Sundeep Khosla, David G Monroe · 2022 to 2026
$2.4M
The role of sub-lethal mitochondrial apoptotic stress in cellular senescenceR01AG068048 · NIA · MAYO CLINIC ROCHESTER · PI PASSOS, JOAO · 2020 to 2024
$2.2M
Targeting Cellular Senescence and RAGE in Type 2 DiabetesR01DK128552 · NIDDK · UNIVERSITY OF ARIZONA · PI FARR, JOSHUA NICHOLAS · 2021 to 2025
$2.0M
Development of machine learning software to quantitatively map telomere induced senescence in tissue sections during agingUH3CA268103 · NCI · MAYO CLINIC ROCHESTER · PI PASSOS, JOAO · 2023 to 2025
$1.6M
The Role of miR-219a-5p in Bone MetabolismR01AG063707 · NIA · MAYO CLINIC ROCHESTER · PI MONROE, DAVID G · 2020 to 2024
$1.5M
Postdoctoral Training Program for Research on AgingT32AG049672 · NIA · MAYO CLINIC ROCHESTER · PI PASSOS, JOAO · 2016 to 2022
$1.3M
Development of machine learning software to quantitatively map telomere induced senescence in tissue sections during agingUG3CA268103 · NCI · MAYO CLINIC ROCHESTER · PI PASSOS, JOAO · 2021 to 2022
$1.1M
NCI NIH HHS UG3 CA268103NCI NIH HHS UH3 CA268103NIAMS NIH HHS K01 AR070241NIA NIH HHS P01 AG062413NIA NIH HHS P30 AG013319NIA NIH HHS R01 AG055529NIA NIH HHS R01 AG063707NIA NIH HHS R01 AG068048NIA NIH HHS R01 AG076515NIA NIH HHS R21 AG065868NIA NIH HHS R33 AG061456NIA NIH HHS R37 AG013925NIA NIH HHS R56 AG060907NIA NIH HHS T32 AG049672NIDDK NIH HHS R01 DK128552
6 · The paper itself

Abstract

Although cellular senescence drives multiple age-related co-morbidities through the senescence-associated secretory phenotype, in vivo senescent cell identification remains challenging. Here, we generate a gene set (SenMayo) and validate its enrichment in bone biopsies from two aged human cohorts. We further demonstrate reductions in SenMayo in bone following genetic clearance of senescent cells in mice and in adipose tissue from humans following pharmacological senescent cell clearance. We next use SenMayo to identify senescent hematopoietic or mesenchymal cells at the single cell level from human and murine bone marrow/bone scRNA-seq data. Thus, SenMayo identifies senescent cells across tissues and species with high fidelity. Using this senescence panel, we are able to characterize senescent cells at the single cell level and identify key intercellular signaling pathways. SenMayo also represents a potentially clinically applicable panel for monitoring senescent cell burden with aging and other conditions as well as in studies of senolytic drugs.

Indexed as

Cellular SenescenceMesenchymal Stem CellsAdipose TissueAgedAgingAnimalsBone and BonesHumansMice

Identifiers

PMID35974106
PMCPMC9381717
OpenAlexW4292004337

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.