Evidence map›Paper›PMID 35973982›Full record

ArticleNature communications2022

Copper starvation induces antimicrobial isocyanide integrated into two distinct biosynthetic pathways in fungi.

Tae Hyung Won, Jin Woo Bok, Nischala Nadig, Nandhitha Venkatesh, Grant Nickles, Claudio Greco, Fang Yun Lim, Jennifer B González, B Gillian Turgeon, Nancy P Keller and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Identification of Natural Isonitriles Through Ligation to an Azomethine Imine Probe.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  8. Review
  9. Article
  10. Copper-chelating natural products.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2025
    Review
  11. Article
  12. Characterization of a High-Affinity Copper TransporterJournal of fungi (Basel, Switzerland) · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. A Timeline of Biosynthetic Gene Cluster Discovery inJournal of fungi (Basel, Switzerland) · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Tae Hyung WonBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Jin Woo BokDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Nischala NadigDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Nandhitha VenkateshDepartment of Plant Pathology, University of Wisconsin-Madison, Madison, WI, USA.
Grant NicklesDepartment of Cellular and Molecular Biology, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-0234-8049
Claudio GrecoDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Fang Yun LimDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0001-7406-2317
Jennifer B GonzálezDepartment of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY, USA.
B Gillian TurgeonDepartment of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY, USA.
Nancy P KellerDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA. npkeller@wisc.edu.ORCID 0000-0002-4386-9473
Frank C SchroederBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA. schroeder@cornell.edu.ORCID 0000-0002-4420-0237
University of Wisconsin–Madison · USCornell University · USJohn Innes Centre · GB

Funding

Biotechnology Training ProgramT32GM135066 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SCOTT M. COYLE, BRIAN G FOX · 2020 to 2026
$7.0M
Rapid discovery of thousands of intact biosynthetic gene pathways for bioactive natural product compounds from un-sequenced filamentous fungi using a novel FAC-NGS toolR44AI140943 · NIAID · INTACT GENOMICS, INC. · PI BOK, JIN WOO, CROFTS, TERENCE SPENCER · 2019 to 2022
$3.3M
Comprehensive analysis of NRPS-derived metabolomes of three Aspergillus speciesR01GM112739 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KELLER, NANCY P · 2015 to 2023
$2.8M
Howard Hughes Medical InstituteNIAID NIH HHS R44 AI140943NIGMS NIH HHS R01 GM112739NIGMS NIH HHS T32 GM135066
6 · The paper itself

Abstract

The genomes of many filamentous fungi, such as Aspergillus spp., include diverse biosynthetic gene clusters of unknown function. We previously showed that low copper levels upregulate a gene cluster that includes crmA, encoding a putative isocyanide synthase. Here we show, using untargeted comparative metabolomics, that CrmA generates a valine-derived isocyanide that contributes to two distinct biosynthetic pathways under copper-limiting conditions. Reaction of the isocyanide with an ergot alkaloid precursor results in carbon-carbon bond formation analogous to Strecker amino-acid synthesis, producing a group of alkaloids we term fumivalines. In addition, valine isocyanide contributes to biosynthesis of a family of acylated sugar alcohols, the fumicicolins, which are related to brassicicolin A, a known isocyanide from Alternaria brassicicola. CrmA homologs are found in a wide range of pathogenic and non-pathogenic fungi, some of which produce fumicicolin and fumivaline. Extracts from A. fumigatus wild type (but not crmA-deleted strains), grown under copper starvation, inhibit growth of diverse bacteria and fungi, and synthetic valine isocyanide shows antibacterial activity. CrmA thus contributes to two biosynthetic pathways downstream of trace-metal sensing.

Indexed as

Anti-Infective AgentsBiosynthetic PathwaysAnti-Bacterial AgentsAspergillus fumigatusCarbonCopperCyanidesFungiMultigene FamilyValineAnti-Bacterial AgentsAnti-Infective AgentsCarbonCopperCyanidesValine

Identifiers

PMID35973982
PMCPMC9381783
OpenAlexW4292002709

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.