Evidence map›Paper›PMID 35972957›Full record

ArticlePLoS genetics2022

RETRACTED: Constraints on the evolution of toxin-resistant Na,K-ATPases have limited dependence on sequence divergence.

Shabnam Mohammadi, Santiago Herrera-Álvarez, Lu Yang, María Del Pilar Rodríguez-Ordoñez, Karen Zhang, Jay F Storz, Susanne Dobler, Andrew J Crawford, Peter Andolfatto

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Evolutionary insights into NaBMC ecology and evolution · 2025
    Article
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  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Identification of the NAJournal of chemical ecology · 2023
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Shabnam MohammadiSchool of Biological Sciences, University of Nebraska, Lincoln, Nebraska, United States of America.ORCID 0000-0003-3450-6424
Santiago Herrera-ÁlvarezDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.ORCID 0000-0002-0793-7811
Lu YangDepartment of Ecology and Evolution, Princeton University, Princeton, New Jersey, United States of America.
María Del Pilar Rodríguez-OrdoñezDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.ORCID 0000-0002-0856-1297
Karen ZhangDepartment of Ecology and Evolution, Princeton University, Princeton, New Jersey, United States of America.ORCID 0000-0003-4406-9977
Jay F StorzSchool of Biological Sciences, University of Nebraska, Lincoln, Nebraska, United States of America.
Susanne DoblerMolecular Evolutionary Biology, Institut für Zell- und Systembiologie der Tiere, Universität Hamburg, Hamburg, Germany.
Andrew J CrawfordDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.ORCID 0000-0003-3153-6898
Peter AndolfattoDepartment of Biological Sciences, Columbia University, New York city, New York, United States of America.ORCID 0000-0003-3393-4574
Universidad de Los Andes · COPrinceton University · USUniversity of Nebraska–Lincoln · USColumbia University · USUniversität Hamburg · DE

Funding

Mutational Pleiotropy, Epistasis, and the Adaptive Evolution of Hemoglobin FunctionR01HL087216 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI STORZ, JAY · 2008 to 2021
$4.5M
Parallel evolution at Na,K-ATPase: a model system for understanding constraints on the evolution of novel protein functions.R01GM115523 · NIGMS · PRINCETON UNIVERSITY · PI ANDOLFATTO, PETER · 2015 to 2024
$2.8M
Epistasis as a source of contingency in the adaptive evolution of protein functionF32HL149172 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI MOHAMMADI, SHABNAM · 2019 to 2021
$155k
NHLBI NIH HHS F32 HL149172NHLBI NIH HHS R01 HL087216NIGMS NIH HHS R01 GM115523
6 · The paper itself

Abstract

A growing body of theoretical and experimental evidence suggests that intramolecular epistasis is a major determinant of rates and patterns of protein evolution and imposes a substantial constraint on the evolution of novel protein functions. Here, we examine the role of intramolecular epistasis in the recurrent evolution of resistance to cardiotonic steroids (CTS) across tetrapods, which occurs via specific amino acid substitutions to the α-subunit family of Na,K-ATPases (ATP1A). After identifying a series of recurrent substitutions at two key sites of ATP1A that are predicted to confer CTS resistance in diverse tetrapods, we then performed protein engineering experiments to test the functional consequences of introducing these substitutions onto divergent species backgrounds. In line with previous results, we find that substitutions at these sites can have substantial background-dependent effects on CTS resistance. Globally, however, these substitutions also have pleiotropic effects that are consistent with additive rather than background-dependent effects. Moreover, the magnitude of a substitution's effect on activity does not depend on the overall extent of ATP1A sequence divergence between species. Our results suggest that epistatic constraints on the evolution of CTS-resistant forms of Na,K-ATPase likely depend on a small number of sites, with little dependence on overall levels of protein divergence. We propose that dependence on a limited number sites may account for the observation of convergent CTS resistance substitutions observed among taxa with highly divergent Na,K-ATPases (See S1 Text for Spanish translation).

Indexed as

Sodium-Potassium-Exchanging ATPaseToxins, BiologicalAmino Acid SequenceAmino Acid SubstitutionSodiumSodiumSodium-Potassium-Exchanging ATPaseToxins, Biological

Identifiers

PMID35972957
PMCPMC9462791
OpenAlexW4292066875

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.