Evidence map›Paper›PMID 35972350›Full record

ArticlePlant physiology2022

The vacuolar H+/Ca transporter CAX1 participates in submergence and anoxia stress responses.

Jian Yang, Iny Elizebeth Mathew, Hormat Rhein, Richard Barker, Qi Guo, Luca Brunello, Elena Loreti, Bronwyn J Barkla, Simon Gilroy, Pierdomenico Perata and 1 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Evolution and diversification of CaBMC plant biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Calcium signaling triggers early high humidity responses inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Jian YangPediatrics-Nutrition, Children's Nutrition Research, Baylor College of Medicine, Houston, Texas 77030, USA.ORCID 0000-0003-3281-8803
Iny Elizebeth MathewPediatrics-Nutrition, Children's Nutrition Research, Baylor College of Medicine, Houston, Texas 77030, USA.ORCID 0000-0002-3996-3141
Hormat RheinPediatrics-Nutrition, Children's Nutrition Research, Baylor College of Medicine, Houston, Texas 77030, USA.ORCID 0000-0001-9878-6213
Richard BarkerDepartment of Botany, Birge Hall, University of Wisconsin, Wisconsin, USA.ORCID 0000-0001-5681-9857
Qi GuoSouthern Cross Plant Science, Southern Cross University, Lismore, New South Wales, Australia.ORCID 0000-0002-3528-2533
Luca BrunelloPlant Lab, Institute of Life Sciences, Scuola Superiore Sant'Anna, San Giuliano Terme, Pisa, Italy.ORCID 0000-0002-0284-3541
Elena LoretiInstitute of Agricultural Biology and Biotechnology, National Research Council, 56124 Pisa, Italy.ORCID 0000-0002-5255-4983
Bronwyn J BarklaSouthern Cross Plant Science, Southern Cross University, Lismore, New South Wales, Australia.
Simon GilroyDepartment of Botany, Birge Hall, University of Wisconsin, Wisconsin, USA.ORCID 0000-0001-9597-6839
Pierdomenico PerataPlant Lab, Institute of Life Sciences, Scuola Superiore Sant'Anna, San Giuliano Terme, Pisa, Italy.ORCID 0000-0001-9444-0610
Kendal D HirschiPediatrics-Nutrition, Children's Nutrition Research, Baylor College of Medicine, Houston, Texas 77030, USA.ORCID 0000-0001-6122-3222
Children's Nutrition Research Center at Baylor College of Medicine · USScuola Superiore Sant'Anna · ITSouthern Cross University · AUNational Research Council · IT

Funding

Plant Exosomes and MicroRNAs Regulate the Microbiome and Intestinal HomeostasisR03AI149201 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI HIRSCHI, KENDAL D · 2020 to 2021
$146k
NIAID NIH HHS R03 AI149201
6 · The paper itself

Abstract

A plant's oxygen supply can vary from normal (normoxia) to total depletion (anoxia). Tolerance to anoxia is relevant to wetland species, rice (Oryza sativa) cultivation, and submergence tolerance of crops. Decoding and transmitting calcium (Ca) signals may be an important component to anoxia tolerance; however, the contribution of intracellular Ca transporters to this process is poorly understood. Four functional cation/proton exchangers (CAX1-4) in Arabidopsis (Arabidopsis thaliana) help regulate Ca homeostasis around the vacuole. Our results demonstrate that cax1 mutants are more tolerant to both anoxic conditions and submergence. Using phenotypic measurements, RNA-sequencing, and proteomic approaches, we identified cax1-mediated anoxia changes that phenocopy changes present in anoxia-tolerant crops: altered metabolic processes, diminished reactive oxygen species production post anoxia, and altered hormone signaling. Comparing wild-type and cax1 expressing genetically encoded Ca indicators demonstrated altered cytosolic Ca signals in cax1 during reoxygenation. Anoxia-induced Ca signals around the plant vacuole are involved in the control of numerous signaling events related to adaptation to low oxygen stress. This work suggests that cax1 anoxia response pathway could be engineered to circumvent the adverse effects of flooding that impair production agriculture.

Indexed as

ArabidopsisCation Transport ProteinsAntiportersCalciumHumansHypoxiaOxygenProteomicsProtonsVacuolesAntiportersCalciumCation Transport ProteinsOxygenProtons

Identifiers

PMID35972350
PMCPMC9706465
OpenAlexW4292177546

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.