Evidence map›Paper›PMID 35971838›Full record

ArticleThe EMBO journal2022

m6A is required for resolving progenitor identity during planarian stem cell differentiation.

Yael Dagan, Yarden Yesharim, Ashley R Bonneau, Tamar Frankovits, Schraga Schwartz, Peter W Reddien, Omri Wurtzel

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. RNA mJournal of advanced research · 2026
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  3. DNA methylation in invertebrate genomes and cell lineage plasticity.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  4. mbioRxiv : the preprint server for biology · 2026
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  5. High-stoichiometry mRNA (New York, N.Y.) · 2026
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  7. NResearch (Washington, D.C.) · 2026
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  8. Article
  9. Regulation and application of mScience China. Life sciences · 2025
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  12. Exploring the potential ofCurrent research in toxicology · 2025
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  13. The In Vitro Enhancement of Retinal Cell Viability via mInternational journal of molecular sciences · 2024
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  14. Article
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  16. Review
  17. Article
  18. mCell proliferation · 2023
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  19. PLANAtools-An interactive gene expression repository for the planarianFrontiers in cell and developmental biology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yael Dagan *The George S. Wise Faculty of Life Sciences, School of Neurobiology, Biochemistry, and Biophysics, Tel Aviv University, Tel Aviv, Israel.
Yarden Yesharim *The George S. Wise Faculty of Life Sciences, School of Neurobiology, Biochemistry, and Biophysics, Tel Aviv University, Tel Aviv, Israel.
Ashley R BonneauWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Tamar FrankovitsThe George S. Wise Faculty of Life Sciences, School of Neurobiology, Biochemistry, and Biophysics, Tel Aviv University, Tel Aviv, Israel.
Schraga SchwartzDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Peter W ReddienWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Omri WurtzelThe George S. Wise Faculty of Life Sciences, School of Neurobiology, Biochemistry, and Biophysics, Tel Aviv University, Tel Aviv, Israel.ORCID 0000-0002-6865-5914
Tel Aviv University · ILHoward Hughes Medical Institute · USWeizmann Institute of Science · IL

Funding

Stem cell and regeneration regulatory genes in planariansR01GM080639 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI REDDIEN, PETER · 2008 to 2020
$4.6M
Stem cell and regeneration regulatory mechanisms in planariansR35GM145345 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PETER REDDIEN · 2022 to 2026
$2.4M
How embryos establish a positional memory to enable adult regeneration.F32GM128411 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI BONNEAU, ASHLEY R · 2018 to 2018
$49k
NIGMS NIH HHS F32 GM128411NIGMS NIH HHS R01 GM080639NIGMS NIH HHS R35 GM145345
6 · The paper itself

Abstract

Regeneration and tissue homeostasis require accurate production of missing cell lineages. Cell production is driven by changes to gene expression, which is shaped by multiple layers of regulation. Here, we find that the ubiquitous mRNA base-modification, m6A, is required for proper cell fate choice and cellular maturation in planarian stem cells (neoblasts). We mapped m6A-enriched regions in 7,600 planarian genes and found that perturbation of the m6A pathway resulted in progressive deterioration of tissues and death. Using single-cell RNA sequencing of >20,000 cells following perturbation of the m6A pathway, we identified an increase in expression of noncanonical histone variants, and that inhibition of the pathway resulted in accumulation of undifferentiated cells throughout the animal in an abnormal transcriptional state. Analysis of >1,000 planarian gene expression datasets revealed that the inhibition of the chromatin modifying complex NuRD had almost indistinguishable consequences, unraveling an unappreciated link between m6A and chromatin modifications. Our findings reveal that m6A is critical for planarian stem cell homeostasis and gene regulation in tissue maintenance and regeneration.

Indexed as

PlanariansAnimalsCell DifferentiationChromatinHomeostasisStem CellsChromatindifferentiationm6Aplanarianregenerationstem cells

Identifiers

PMID35971838
PMCPMC9627665
OpenAlexW4292196019

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.