Evidence map›Paper›PMID 35968956›Full record

ArticlemBio2022

Transcriptomics and Phenotyping Define Genetic Signatures Associated with Echinocandin Resistance in Candida auris.

Sabrina Jenull, Raju Shivarathri, Irina Tsymala, Philipp Penninger, Phan-Canh Trinh, Filomena Nogueira, Manju Chauhan, Ashutosh Singh, Andriy Petryshyn, Anton Stoiber and 3 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

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  18. What makesAntimicrobial agents and chemotherapy · 2024
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  19. Annual review of microbiology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Sabrina JenullDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.
Raju ShivarathriPublic Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jerseygrid.430387.b, Newark, New Jersey, USA.
Irina TsymalaDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.
Philipp PenningerDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.
Phan-Canh TrinhDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.ORCID 0000-0002-6399-0959
Filomena NogueiraDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.
Manju ChauhanPublic Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jerseygrid.430387.b, Newark, New Jersey, USA.
Ashutosh SinghNational Reference Laboratory for Antimicrobial Resistance in Fungal Pathogens, Medical Mycology Unit, Department of Microbiology, Vallabhbhai Patel Chest Institute, University of Delhi, Delhi, India.
Andriy PetryshynDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.
Anton StoiberDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.
Anuradha ChowdharyNational Reference Laboratory for Antimicrobial Resistance in Fungal Pathogens, Medical Mycology Unit, Department of Microbiology, Vallabhbhai Patel Chest Institute, University of Delhi, Delhi, India.ORCID 0000-0002-2028-7462
Neeraj ChauhanPublic Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jerseygrid.430387.b, Newark, New Jersey, USA.ORCID 0000-0002-9252-9897
Karl KuchlerDepartment of Medical Biochemistry, Max Perutz Labs Vienna, Medical University of Viennagrid.22937.3d, Campus Vienna Biocenter, Vienna, Austria.ORCID 0000-0003-2719-5955
Max Perutz Labs · ATRutgers, The State University of New Jersey · USUniversity of Delhi · INUniversity of Veterinary Medicine Vienna · AT

Funding

The Candida albicans acetylome in fungal virulenceR01AI124499 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI CHAUHAN, NEERAJ · 2016 to 2019
$1.6M
Austrian Science Fund FWF DOC 32Austrian Science Fund FWF P 32582NIAID NIH HHS R01 AI124499
6 · The paper itself

Abstract

Candida auris emerged as a human fungal pathogen only during the past decade. Remarkably, C. auris displays high degrees of genomic diversity and phenotypic plasticity, with four major clades causing hospital outbreaks with high mortality and morbidity rates. C. auris can show clinical resistance to all classes of antifungal drugs, including echinocandins that are usually recommended as first-line therapies for invasive candidiasis. Here, we exploit transcriptomics coupled with phenotypic profiling to characterize a set of clinical C. auris isolates displaying pronounced echinocandin resistance (ECN-R). A hot spot mutation in the echinocandin

Indexed as

Candidiasis, InvasiveEchinocandinsAntifungal AgentsCandidaCandida aurisDrug Resistance, FungalHumansMicrobial Sensitivity TestsTranscriptomeAntifungal AgentsEchinocandinsantifungal resistanceCandida aurisphenotypic variationtranscriptomics

Identifiers

PMID35968956
PMCPMC9426441
OpenAlexW4291605667

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.