Evidence map›Paper›PMID 35968571›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2022

Genome-Wide 3'-UTR Single Nucleotide Polymorphism Association Study Identifies Significant Prostate Cancer Risk-Associated Functional Loci at 8p21.2 in Chinese Population.

Ning Zhang, Da Huang, Guangliang Jiang, Siteng Chen, Xiaohao Ruan, Haitao Chen, Jingyi Huang, Ao Liu, Wenhui Zhang, Xiaoling Lin and 6 more

Open access · goldAbstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Functional Analysis ofThe application of clinical genetics · 2024
    Article
  6. Review
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Ning ZhangDepartment of Urology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, China.
Da HuangDepartment of Urology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, China.ORCID 0000-0002-6203-9459
Guangliang JiangDepartment of Urology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, China.
Siteng ChenDepartment of Urology, Renji Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200080, China.
Xiaohao RuanDepartment of Urology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, China.
Haitao ChenSchool of Public Health Shenzhen, Sun Yat-sen University, Guangzhou, 510006, China.
Jingyi HuangDepartment of Urology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, China.
Ao LiuDepartment of Urology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, China.
Wenhui ZhangDepartment of Urology, Changhai Hospital, Second Military Medical University, Shanghai, 200433, China.
Xiaoling LinDepartment of Urology, Huashan Hospital, Fudan University, Shanghai, 200040, China.
Yishuo WuDepartment of Urology, Huashan Hospital, Fudan University, Shanghai, 200040, China.
Qin ZhangBiocenter Oulu, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, 90014, Finland.
Jing LiDepartment of Bioinformatics, Center for Translational Medicine, Second Military Medical University, Shanghai, 200433, China.
James Hok-Leung TsuDivision of Urology, Department of Surgery, Queen Mary Hospital, The University of Hong Kong, Hong Kong, China.
Gong-Hong WeiBiocenter Oulu, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, 90014, Finland.
Rong NaDivision of Urology, Department of Surgery, Queen Mary Hospital, The University of Hong Kong, Hong Kong, China.ORCID 0000-0001-5948-2647
Shanghai Jiao Tong University · CNFudan University · CNQueen Mary Hospital · CNSecond Military Medical University · CNShanghai Medical College of Fudan University · CNSun Yat-sen University · CNUniversity of Oulu · FI

Funding

Fudan University recruit fundingNational Natural Science Foundation of China 81772741National Natural Science Foundation of China 81972645Shanghai Rising-Star Program 18QA1402800Shanghai Sailing Program 22YF1440500Shanghai Youth Talent Support ProgramThe Sigrid Juselius Foundation grant
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are involved in the regulation of gene expression via incomplete base pairing to sequence motifs at the three prime untranslated regions (3'-UTRs) of mRNAs and play critical roles in the etiology of cancers. Single nucleotide polymorphisms (SNPs) in the 3'-UTR miRNA-binding regions may influence the miRNA affinity. However, this biological mechanism in prostate cancer (PCa) remains unclear. Here, a three-stage genome-wide association study of 3'-UTR SNPs (n=33 117) is performed in 5515 Chinese men. Three genome-wide significant variants are discovered at 8p21.2 (rs1567669, rs4872176, and rs4872177), which are all located in a linkage disequilibrium region of the NKX3-1 gene. Phenome-wide association analysis using the FinnGen data reveals a specific association of rs1567669 with PCa over 2,264 disease endpoints. Expression quantitative trait locus analyses based on both Chinese PCa cohort and the GTEx database show that risk alleles of these SNPs are significantly associated with low expression of NKX3-1. Based on the MirSNP database, dual-luciferase reporter assays show that risk alleles of these SNPs downregulate the expression of NKX3-1 via increased miRNA binding. These results indicate that the SNPs at the 3'-UTR of NKX3-1 significantly downregulate NKX3-1 expression by influencing the affinity of miRNA and increase the PCa risk.

Indexed as

3' Untranslated RegionsHomeodomain ProteinsMicroRNAsPolymorphism, Single NucleotideProstatic NeoplasmsTranscription FactorsChinaGenome-Wide Association StudyHumansMale3' Untranslated RegionsHomeodomain ProteinsMicroRNAsNKX3-1 protein, humanTranscription Factors3′-UTRmicroRNANKX3-1prostate cancersingle nucleotide polymorphism

Identifiers

PMID35968571
PMCPMC9376745
OpenAlexW4291449210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.