Evidence map›Paper›PMID 35967379›Full record

ArticleFrontiers in immunology2022

Peptide Centric Vβ Specific Germline Contacts Shape a Specialist T Cell Response.

Yang Wang, Alexandra Tsitsiklis, Stephanie Devoe, Wei Gao, H Hamlet Chu, Yan Zhang, Wei Li, Wing Ki Wong, Charlotte M Deane, David Neau and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Yang WangDepartment of Pharmaceutical Sciences, University of Colorado School of Pharmacy, Aurora, CO, United States.
Alexandra TsitsiklisDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, United States.
Stephanie DevoeDepartment of Pharmaceutical Sciences, University of Colorado School of Pharmacy, Aurora, CO, United States.
Wei GaoDepartment of Pharmaceutical Sciences, University of Colorado School of Pharmacy, Aurora, CO, United States.
H Hamlet ChuDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, United States.
Yan ZhangDepartment of Pharmaceutical Sciences, University of Colorado School of Pharmacy, Aurora, CO, United States.
Wei LiDepartment of Pharmaceutical Sciences, University of Colorado School of Pharmacy, Aurora, CO, United States.
Wing Ki WongDepartment of Statistics, University of Oxford, Oxford, United Kingdom.
Charlotte M DeaneDepartment of Statistics, University of Oxford, Oxford, United Kingdom.
David NeauDepartment of Chemistry and Chemical Biology, Northeastern Collaborative Access Team (NE-CAT), Advanced Photon Source, Argonne National Laboratory, Cornell University, Argonne, IL, United States.
Jill E SlanskyDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, United States.
Paul G ThomasDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Ellen A RobeyDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, United States.
Shaodong DaiDepartment of Pharmaceutical Sciences, University of Colorado School of Pharmacy, Aurora, CO, United States.
University of Colorado Denver · USUniversity of California, Berkeley · USUniversity of Oxford · GBArgonne National Laboratory · USSt. Jude Children's Research Hospital · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
TRAINING PROGRAM IN IMMUNOLOGYT32AI007405 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Laurel L Lenz, Raul Martin Torres · 1991 to 2026
$10.5M
Visualizing of Immune Responses to Toxoplasma GondiiR01AI065537 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROBEY, ELLEN A · 2005 to 2019
$5.1M
Molecular Mechanisms of Immune ToleranceT32AI074491 · NIAID · NATIONAL JEWISH HEALTH · PI CAMBIER, JOHN C, PELANDA, ROBERTA · 2009 to 2023
$4.1M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Molecular Basis of T Cell Recognition of Metal IonsR01ES025797 · NIEHS · UNIVERSITY OF COLORADO DENVER · PI DAI, SHAODONG · 2015 to 2019
$1.8M
Regulation of T cell responses during chronic infection by Toxoplasma gondiiR01AI093132 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROBEY, ELLEN A · 2011 to 2015
$948k
Diabetogenic CD4 T Cell Recognition of Hybrid Peptide LigandsR56AI153488 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAI, SHAODONG · 2020 to 2020
$513k
Heavy Metal Induced AutoimmunityR21ES025885 · NIEHS · UNIVERSITY OF COLORADO DENVER · PI DAI, SHAODONG · 2017 to 2018
$432k
T Cell Recognition of Disulfide Modified AntigensR21AI149655 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAI, SHAODONG · 2020 to 2021
$428k
NIAID NIH HHS R01 AI065537NIAID NIH HHS R01 AI093132NIAID NIH HHS R21 AI149655NIAID NIH HHS R56 AI153488NIAID NIH HHS T32 AI007405NIAID NIH HHS T32 AI074491NIEHS NIH HHS R01 ES025797NIEHS NIH HHS R21 ES025885NIH HHS S10 OD021527
6 · The paper itself

Abstract

Certain CD8 T cell responses are particularly effective at controlling infection, as exemplified by elite control of HIV in individuals harboring HLA-B57. To understand the structural features that contribute to CD8 T cell elite control, we focused on a strongly protective CD8 T cell response directed against a parasite-derived peptide (HF10) presented by an atypical MHC-I molecule, H-2Ld. This response exhibits a focused TCR repertoire dominated by Vβ2, and a representative TCR (TG6) in complex with Ld-HF10 reveals an unusual structure in which both MHC and TCR contribute extensively to peptide specificity, along with a parallel footprint of TCR on its pMHC ligand. The parallel footprint is a common feature of Vβ2-containing TCRs and correlates with an unusual Vα-Vβ interface, CDR loop conformations, and Vβ2-specific germline contacts with peptides. Vβ2 and Ld may represent "specialist" components for antigen recognition that allows for particularly strong and focused T cell responses.

Indexed as

CD8-Positive T-LymphocytesPeptidesReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaGerm CellsHistocompatibility Antigen H-2DMolecular ConformationTransglutaminasesHistocompatibility Antigen H-2DPeptidesReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaTransglutaminaseselite controllergermline contactsMHCstructureTCR

Identifiers

PMID35967379
PMCPMC9372435
OpenAlexW4288489014

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.