Evidence map›Paper›PMID 35965006›Full record

ArticleMethods in enzymology2022

Bulk phase biochemistry of PIF1 and RecQ4 family helicases.

Prasangi Rajapaksha, Robert H Simmons, Spencer J Gray, David J Sun, Phoebe Nguyen, David G Nickens, Matthew L Bochman

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Prasangi RajapakshaMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN, United States.
Robert H SimmonsMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN, United States.
Spencer J GrayMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN, United States.
David J SunMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN, United States.
Phoebe NguyenMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN, United States.
David G NickensMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN, United States.
Matthew L BochmanMolecular & Cellular Biochemistry Department, Indiana University, Bloomington, IN, United States. Electronic address: bochman@iu.edu.
Indiana University Bloomington · US

Funding

DNA helicases and associated factors in genome stabilityR35GM133437 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BOCHMAN, MATTHEW LINNE · 2019 to 2023
$2.4M
NIGMS NIH HHS R35 GM133437
6 · The paper itself

Abstract

DNA helicases are involved in nearly all facets of genome integrity, and in humans, mutations in helicase-encoding genes are often linked to diseases of genomic instability. Two highly studied and evolutionarily conserved helicase families are the PIF1 and RecQ helicases. Enzymes in these families have known roles in DNA replication, recombination, and repair, as well as telomere maintenance, DNA recombination, and transcription. Although genetics, structural biology, and a variety of other techniques have been used to study these helicases, ensemble analyses of their basic biochemical activities such as DNA binding, ATP hydrolysis, and DNA unwinding have made significant contributions to our understanding of their physiological roles. Here, we present general methods to generate recombinant proteins from both helicase families, as well as standard biochemical assays to investigate their activities on DNA.

Indexed as

DNA ReplicationRecQ HelicasesDNADNA HelicasesDNA RepairGenomic InstabilityHumansDNADNA HelicasesPIF1 protein, humanRecQ HelicasesATPaseDNA bindingHelicaseHrq1PIF1RecQ

Identifiers

PMID35965006
PMCPMC9382717
OpenAlexW4225718849

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.