Evidence map›Paper›PMID 35962146›Full record

ArticleCommunications biology2022

Modeling SARS-CoV-2 and influenza infections and antiviral treatments in human lung epithelial tissue equivalents.

Hoda Zarkoob, Anna Allué-Guardia, Yu-Chi Chen, Andreu Garcia-Vilanova, Olive Jung, Steven Coon, Min Jae Song, Jun-Gyu Park, Fatai Oladunni, Jesse Miller and 13 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 4 institutions in 2 countries.

Hoda Zarkoob *3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA.
Anna Allué-Guardia *Host-Pathogen Interactions and Population Health Programs, Texas Biomedical Research Institute, San Antonio, TX, USA.
Yu-Chi Chen3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA.
Andreu Garcia-VilanovaHost-Pathogen Interactions and Population Health Programs, Texas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0002-2385-8718
Olive Jung3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA.ORCID 0000-0001-6021-1270
Steven CoonMolecular Genomics Core, National Institute of Child Health and Human Development, National Institutes of Health, Rockville, MD, USA.
Min Jae Song3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA.ORCID 0000-0003-1744-0806
Jun-Gyu ParkHost-Pathogen Interactions and Population Health Programs, Texas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0001-7163-3591
Fatai OladunniHost-Pathogen Interactions and Population Health Programs, Texas Biomedical Research Institute, San Antonio, TX, USA.
Jesse MillerDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-7990-4912
Yen-Ting Tung3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA.
Ivan KosikNational Institute for Allergies and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
David SchultzDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-7890-8815
James IbenMolecular Genomics Core, National Institute of Child Health and Human Development, National Institutes of Health, Rockville, MD, USA.
Tianwei LiMolecular Genomics Core, National Institute of Child Health and Human Development, National Institutes of Health, Rockville, MD, USA.
Jiaqi Fu3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA.
Forbes D PorterSection on Molecular Dysmorphology, Division of Translational Medicine, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Department of Health and Human Services, Bethesda, MD, 20892, USA.
Jonathan YewdellNational Institute for Allergies and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-3826-1906
Luis Martinez-SobridoHost-Pathogen Interactions and Population Health Programs, Texas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0001-7084-0804
Sara CherryDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-3956-6610
Jordi B TorrellesHost-Pathogen Interactions and Population Health Programs, Texas Biomedical Research Institute, San Antonio, TX, USA.ORCID 0000-0001-7702-5941
Marc Ferrer3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA. marc.ferrer@nih.gov.
Emily M Lee3D Tissue Bioprinting Lab, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA. emily.lee@nih.gov.
National Institutes of Health · USTexas Biomedical Research Institute · USUniversity of Pennsylvania · USHigh Throughput Biology (United States) · US

Funding

Molecular Genomics Sequencing Core FacilityZICHD008958 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MAHADEVAN, VIVEK · 2016 to 2025
$19.0M
Dynamics of the protective vaccine-induced human influenza neuraminidase B cell responseR01AI145332 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KOBIE, JAMES J, MARTINEZ-SOBRIDO, LUIS · 2019 to 2022
$3.0M
The origin and future protective activity of SARS-CoV-2 RBD specific neutralizing antibodiesR01AI161175 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KOBIE, JAMES J, MARTINEZ-SOBRIDO, LUIS · 2021 to 2024
$2.5M
COVID-19: 3D Bioprinted Tissue Models for Respiratory VirusesZIATR000414 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI FERRER, MARC · 2020 to 2024
$1.1M
Intramural NIH HHS ZIA TR000414NIAID NIH HHS R01 AI145332NIAID NIH HHS R01 AI161175
6 · The paper itself

Abstract

There is a critical need for physiologically relevant, robust, and ready-to-use in vitro cellular assay platforms to rapidly model the infectivity of emerging viruses and develop new antiviral treatments. Here we describe the cellular complexity of human alveolar and tracheobronchial air liquid interface (ALI) tissue models during SARS-CoV-2 and influenza A virus (IAV) infections. Our results showed that both SARS-CoV-2 and IAV effectively infect these ALI tissues, with SARS-CoV-2 exhibiting a slower replication peaking at later time-points compared to IAV. We detected tissue-specific chemokine and cytokine storms in response to viral infection, including well-defined biomarkers in severe SARS-CoV-2 and IAV infections such as CXCL10, IL-6, and IL-10. Our single-cell RNA sequencing analysis showed similar findings to that found in vivo for SARS-CoV-2 infection, including dampened IFN response, increased chemokine induction, and inhibition of MHC Class I presentation not observed for IAV infected tissues. Finally, we demonstrate the pharmacological validity of these ALI tissue models as antiviral drug screening assay platforms, with the potential to be easily adapted to include other cell types and increase the throughput to test relevant pathogens.

Indexed as

COVID-19 Drug TreatmentInfluenza A virusInfluenza, HumanAntiviral AgentsChemokinesEpitheliumHumansLungSARS-CoV-2Virus ReplicationAntiviral AgentsChemokines

Identifiers

PMID35962146
PMCPMC9373898
OpenAlexW4290839171

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.