Evidence map›Paper›PMID 35961859›Full record

ArticleHematological oncology2022

The spectrum of subclonal TP53 mutations in chronic lymphocytic leukemia: A next generation sequencing retrospective study.

Giuseppa De Luca, Giannamaria Cerruti, Sonia Lastraioli, Romana Conte, Adalberto Ibatici, Nikki Di Felice, Fortunato Morabito, Paola Monti, Gilberto Fronza, Serena Matis and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Hematological oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Giuseppa De LucaMolecular Diagnostic Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.ORCID https://orcid.org/0000-0003-4877-1309
Giannamaria CerrutiMolecular Diagnostic Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Sonia LastraioliMolecular Diagnostic Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Romana ConteMolecular Diagnostic Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Adalberto IbaticiHematology Unit and Bone Marrow Transplantation, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Nikki Di FeliceHematology Unit and Bone Marrow Transplantation, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Fortunato MorabitoBiotechnology Research Unit, Aprigliano, A.O./ASP of Cosenza, Cosenza, Italy.
Paola MontiMutagenesis and Cancer Prevention Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.ORCID https://orcid.org/0000-0002-1978-4998
Gilberto FronzaMutagenesis and Cancer Prevention Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Serena MatisMolecular Pathology Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Monica ColomboMolecular Pathology Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Sonia FabrisHematology Unit, Fondazione IRCCS Ca' Granda, Ospedale Maggiore Policlinico, Milan, Italy.
Alessia CiarrocchiLaboratory of Translational Research, Azienda USL-IRCCS di Reggio Emilia, Reggio Emilia, Italy.
Antonino NeriScientific Directorate, Azienda USL-IRCCS di Reggio Emilia, Reggio Emilia, Italy.
Paola MenichiniMutagenesis and Cancer Prevention Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Manlio FerrariniDepartment of Experimental Medicine, University of Genoa, Genoa, Italy.
Paolo NozzaDepartment of Pathology, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Franco FaisMolecular Pathology Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.ORCID https://orcid.org/0000-0002-6643-7083
Giovanna CutronaMolecular Pathology Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.ORCID https://orcid.org/0000-0002-3335-1101
Mariella DonoMolecular Diagnostic Unit, IRCCS Ospedale Policlinico San Martino, Genoa, Italy.
Ospedale Policlinico San Martino · ITAzienda Sanitaria Unità Locale di Reggio Emilia · ITAzienda Ospedaliera di Cosenza · ITFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITUniversity of Genoa · IT

Funding

Associazione Italiana Contro le Leucemie-Linfomi e MielomaAssociazione Italiana per la Ricerca sul CancroCompagnia di San PaoloGilead SciencesMinistero della Salute
6 · The paper itself

Abstract

Chronic lymphocytic leukemia (CLL) is a hematological disorder with complex clinical and biological behavior. TP53 mutational status and cytogenetic assessment of the deletion of the corresponding locus (17p13.1) are considered the most relevant biomarkers associated with pharmaco-predictive response, chemo-refractoriness, and worse prognosis in CLL patients. The implementation of Next Generation Sequencing (NGS) methodologies in the clinical laboratory allows for comprehensively analyzing the TP53 gene and detecting mutations with allele frequencies ≤10%, that is, "subclonal mutations". We retrospectively studied TP53 gene mutational status by NGS in 220 samples from 171 CLL patients. TP53 mutations were found in 60/220 (27.3%) samples and 47/171 (27.5%) patients. Interestingly, subclonal mutations could be detected in 31/60 samples (51.7%) corresponding to 25 patients (25/47, 53.2%). We identified 44 distinct subclonal TP53 mutations clustered in the central DNA-binding domain of p53 protein (exons 5-8, codons 133-286). Missense mutations were predominant (>80%), whereas indels, nonsense, and splice site variants were less represented. All subclonal TP53 variants but one [p.(Pro191fs)] were already described in NCI and/or Seshat databases as "damaging" and/or "probably damaging" mutations (38/44, 86% and 6/44, 14%, respectively). Longitudinal samples were available for 37 patients. Almost half of them displayed at least one TP53 mutant subclone, which could be alone (4/16, 25%) or concomitant with other TP53 mutant clonal ones (12/16, 75%); different patterns of mutational dynamics overtimes were documented. In conclusion, utilization of NGS in our "real-life" cohort of CLL patients demonstrated an elevated frequency of subclonal TP53 mutations. This finding indicates the need for precisely identifying these mutations during disease since the clones carrying them may become predominant and be responsible for therapy failures.

Indexed as

High-Throughput Nucleotide SequencingLeukemia, Lymphocytic, Chronic, B-CellHumansRetrospective StudiesTumor Suppressor Protein p53TP53 protein, humanTumor Suppressor Protein p53chronic lymphocytic leukemiaheterogeneityNext Generation Sequencingsubclonal mutationsTP53

Identifiers

PMID35961859
PMCPMC10086786
OpenAlexW4291110827

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.