Evidence map›Paper›PMID 35961775›Full record

ArticleGenome research2022

Recent, full-length gene retrocopies are common in canids.

Kevin Batcher, Scarlett Varney, Daniel York, Matthew Blacksmith, Jeffrey M Kidd, Robert Rebhun, Peter Dickinson, Danika Bannasch

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kevin BatcherDepartment of Population Health and Reproduction, University of California, Davis, Davis, California 95616, USA.ORCID http://orcid.org/0000-0002-1048-1130
Scarlett VarneyDepartment of Population Health and Reproduction, University of California, Davis, Davis, California 95616, USA.
Daniel YorkDepartment of Surgical and Radiological Sciences, University of California, Davis, Davis, California 95616, USA.
Matthew BlacksmithDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Jeffrey M KiddDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.ORCID http://orcid.org/0000-0002-9631-1465
Robert RebhunDepartment of Surgical and Radiological Sciences, University of California, Davis, Davis, California 95616, USA.ORCID http://orcid.org/0000-0002-8047-3494
Peter DickinsonDepartment of Surgical and Radiological Sciences, University of California, Davis, Davis, California 95616, USA.
Danika BannaschDepartment of Population Health and Reproduction, University of California, Davis, Davis, California 95616, USA.ORCID http://orcid.org/0000-0002-7614-7207
University of California, Davis · USUniversity of Michigan · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Identification of Factors Critical for SINE RetrotranspositionR01GM140135 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KIDD, JEFFREY M, MORAN, JOHN V. · 2021 to 2024
$1.9M
NIGMS NIH HHS R01 GM140135NIGMS NIH HHS T32 GM007544
6 · The paper itself

Abstract

Gene retrocopies arise from the reverse transcription and insertion into the genome of processed mRNA transcripts. Although many retrocopies have acquired mutations that render them functionally inactive, most mammals retain active LINE-1 sequences capable of producing new retrocopies. New retrocopies, referred to as retro copy number variants (retroCNVs), may not be identified by standard variant calling techniques in high-throughput sequencing data. Although multiple functional

Indexed as

DNA Copy Number VariationsAnimalsDogsGenomeHumansMaleRetroelementsRetroelements

Identifiers

PMID35961775
PMCPMC9435743
OpenAlexW4290888539

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.