Evidence map›Paper›PMID 35955864›Full record

ArticleInternational journal of molecular sciences2022

Exploring Ligand Binding Domain Dynamics in the NRs Superfamily.

Giulia D'Arrigo, Ida Autiero, Eleonora Gianquinto, Lydia Siragusa, Massimo Baroni, Gabriele Cruciani, Francesca Spyrakis

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Progress of the "Molecular Informatics" Section in 2022.International journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Giulia D'ArrigoDepartment of Drug Science and Technology, University of Turin, Via Giuria 9, 10125 Turin, Italy.
Ida AutieroMolecular Horizon Srl, Via Montelino 30, 06084 Bettona, Italy.
Eleonora GianquintoDepartment of Drug Science and Technology, University of Turin, Via Giuria 9, 10125 Turin, Italy.
Lydia SiragusaMolecular Horizon Srl, Via Montelino 30, 06084 Bettona, Italy.ORCID 0000-0003-4596-7242
Massimo BaroniMolecular Discovery Ltd., Theobald Street, Elstree Borehamwood, Hertfordshire WD6 4PJ, UK.ORCID 0000-0003-0866-148X
Gabriele CrucianiDepartment of Chemistry, Biology and Biotechnology, University of Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy.
Francesca SpyrakisDepartment of Drug Science and Technology, University of Turin, Via Giuria 9, 10125 Turin, Italy.ORCID 0000-0002-4016-227X
University of Turin · ITMolecular Discovery (United Kingdom) · GBInstitute of Biostructure and Bioimaging · ITUniversity of Perugia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nuclear receptors (NRs) are transcription factors that play an important role in multiple diseases, such as cancer, inflammation, and metabolic disorders. They share a common structural organization composed of five domains, of which the ligand-binding domain (LBD) can adopt different conformations in response to substrate, agonist, and antagonist binding, leading to distinct transcription effects. A key feature of NRs is, indeed, their intrinsic dynamics that make them a challenging target in drug discovery. This work aims to provide a meaningful investigation of NR structural variability to outline a dynamic profile for each of them. To do that, we propose a methodology based on the computation and comparison of protein cavities among the crystallographic structures of NR LBDs. First, pockets were detected with the FLAP

Indexed as

Receptors, Cytoplasmic and NuclearTranscription FactorsBinding SitesLigandsProtein DomainsLigandsReceptors, Cytoplasmic and NuclearTranscription Factorsagonistsantagonistsdrug designflexibilityligand binding domainnuclear receptors

Identifiers

PMID35955864
PMCPMC9369052
OpenAlexW4290600387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.