Evidence map›Paper›PMID 35955418›Full record

ArticleInternational journal of molecular sciences2022

Deep Molecular Characterization of Milder Spinal Muscular Atrophy Patients Carrying the c.859G>C Variant in SMN2

Laura Blasco-Pérez, Mar Costa-Roger, Jordi Leno-Colorado, Sara Bernal, Laura Alias, Marta Codina-Solà, Desirée Martínez-Cruz, Claudia Castiglioni, Enrico Bertini, Lorena Travaglini and 14 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Single NucleotideNeurology. Genetics · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. In Search of Spinal Muscular Atrophy Disease Modifiers.International journal of molecular sciences · 2024
    Review
  10. Article
  11. ComplexNeurology. Genetics · 2024
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 4 countries.

Laura Blasco-PérezMedicine Genetics Group, Vall d'Hebron Research Institute (VHIR), Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.ORCID 0000-0001-6483-5742
Mar Costa-RogerMedicine Genetics Group, Vall d'Hebron Research Institute (VHIR), Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.ORCID 0000-0001-8949-9466
Jordi Leno-ColoradoMedicine Genetics Group, Vall d'Hebron Research Institute (VHIR), Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.
Sara BernalGenetics Department and Sant Pau Biomedical Research Institute, Hospital de la Santa Creu i Sant Pau, 08025 Barcelona, Spain.ORCID 0000-0003-4427-0574
Laura AliasGenetics Department and Sant Pau Biomedical Research Institute, Hospital de la Santa Creu i Sant Pau, 08025 Barcelona, Spain.
Marta Codina-SolàMedicine Genetics Group, Vall d'Hebron Research Institute (VHIR), Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.ORCID 0000-0002-5382-413X
Desirée Martínez-CruzMedicine Genetics Group, Vall d'Hebron Research Institute (VHIR), Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.
Claudia CastiglioniDepartamento de Neurología Pediátrica, Clínica Las Condes, 7591047 Santiago de Chile, Chile.ORCID 0000-0002-1981-7550
Enrico BertiniUnit of Neuromuscular and Neurodegenerative Disease, Ospedale Pediatrico Bambino Gesu, IRCCS, 00165 Rome, Italy.
Lorena TravagliniUnit of Neuromuscular and Neurodegenerative Disease, Ospedale Pediatrico Bambino Gesu, IRCCS, 00165 Rome, Italy.
José M MillánCentro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), 28029 Madrid, Spain.ORCID 0000-0002-7211-9129
Elena AllerCentro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), 28029 Madrid, Spain.
Javier SotocaNeuromuscular Diseases Unit, Neurology Department, Hospital Universitari Vall d'Hebron, 08035 Barcelona, Spain.ORCID 0000-0003-3400-1434
Raúl JuntasNeuromuscular Diseases Unit, Neurology Department, Hospital Universitari Vall d'Hebron, 08035 Barcelona, Spain.
Christina Engel Hoei-HansenDepartment of Paediatrics, Copenhagen University Hospital, 2100 Copenhagen, Denmark.
Antonio Moreno-EscribanoNeurology Service and Medical Genetics Section, Hospital Clínico Universitario Virgen de la Arrixaca, IMIB-Arrixaca, Universidad de Murcia, 30120,Murcia, Spain.
Encarna Guillén-NavarroCentro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), 28029 Madrid, Spain.ORCID 0000-0002-2915-7381
Laura Costa-ComellasPediatric Neurology Section, Vall d'Hebron Research Institute (VHIR), Hospital Universitari Vall d'Hebron, Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.
Francina MunellPediatric Neurology Section, Vall d'Hebron Research Institute (VHIR), Hospital Universitari Vall d'Hebron, Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.
Susana BoronatPediatrics Department, Hospital de la Santa Creu i Sant Pau, 08025 Barcelona, Spain.
Ricardo Rojas-GarcíaCentro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), 28029 Madrid, Spain.
Mónica PovedanoUnidad Funcional de Enfermedad de Motoneurona, Servicio de Neurología, Hospital Universitario de Bellvitge, 08907 Barcelona, Spain.
Ivon CuscóMedicine Genetics Group, Vall d'Hebron Research Institute (VHIR), Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.ORCID 0000-0003-2104-9332
Eduardo F TizzanoMedicine Genetics Group, Vall d'Hebron Research Institute (VHIR), Universitat Autònoma de Barcelona (UAB), 08035 Barcelona, Spain.
Universitat Autònoma de Barcelona · ESCentre for Biomedical Network Research on Rare Diseases · ESHospital de Sant Pau · ESBambino Gesù Children's Hospital · ITVall d'Hebron Hospital Universitari · ESBellvitge University Hospital · ESClínica Las Condes · CLHospital Universitario Virgen de la Arrixaca · ESUniversity of Copenhagen · DK

Funding

Biogen ESP-SMG-17-11256Instituto de Salud Carlos III FIS PI18/000687
6 · The paper itself

Abstract

Spinal muscular atrophy (SMA) is a severe neuromuscular disorder caused by biallelic loss or pathogenic variants in the SMN1 gene. Copy number and modifier intragenic variants in SMN2, an almost identical paralog gene of SMN1, are known to influence the amount of complete SMN proteins. Therefore, SMN2 is considered the main phenotypic modifier of SMA, although genotype−phenotype correlation is not absolute. We present eleven unrelated SMA patients with milder phenotypes carrying the c.859G>C-positive modifier variant in SMN2. All were studied by a specific NGS method to allow a deep characterization of the entire SMN region. Analysis of two homozygous cases for the variant allowed us to identify a specific haplotype, Smn2-859C.1, in association with c.859G>C. Two other cases with the c.859G>C variant in their two SMN2 copies showed a second haplotype, Smn2-859C.2, in cis with Smn2-859C.1, assembling a more complex allele. We also identified a previously unreported variant in intron 2a exclusively linked to the Smn2-859C.1 haplotype (c.154-1141G>A), further suggesting that this region has been ancestrally conserved. The deep molecular characterization of SMN2 in our cohort highlights the importance of testing c.859G>C, as well as accurately assessing the SMN2 region in SMA patients to gain insight into the complex genotype−phenotype correlations and improve prognostic outcomes.

Indexed as

Muscular Atrophy, SpinalGenetic Association StudiesHomozygoteHumansIntronsMutationPhenotypeSurvival of Motor Neuron 1 ProteinSurvival of Motor Neuron 2 ProteinSMN2 protein, humanSurvival of Motor Neuron 1 ProteinSurvival of Motor Neuron 2 Proteinnext-generation sequencingphenotype–genotype correlationspositive modifiersSMN2 copiesspinal muscular atrophy

Identifiers

PMID35955418
PMCPMC9368089
OpenAlexW4288067582

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.