Evidence map›Paper›PMID 35954277›Full record

ArticleCells2022

A Comprehensive Transcriptomic Analysis of Arsenic-Induced Bladder Carcinogenesis.

Vaibhav Shukla, Balaji Chandrasekaran, Ashish Tyagi, Ajit Kumar Navin, Uttara Saran, Rosalyn M Adam, Chendil Damodaran

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  8. State of the Art of Genomic Technology in Toxicology: A Review.International journal of molecular sciences · 2023
    Review
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  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Vaibhav ShuklaRangel College of Pharmacy, Texas A&M University, College Station, TX 77843, USA.
Balaji ChandrasekaranRangel College of Pharmacy, Texas A&M University, College Station, TX 77843, USA.
Ashish TyagiRangel College of Pharmacy, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0003-2909-5755
Ajit Kumar NavinRangel College of Pharmacy, Texas A&M University, College Station, TX 77843, USA.
Uttara SaranRangel College of Pharmacy, Texas A&M University, College Station, TX 77843, USA.
Rosalyn M AdamDepartment of Urology, Boston Children's Hospital, and Department of Surgery, Harvard Medical School, Boston, MA 02115, USA.
Chendil DamodaranRangel College of Pharmacy, Texas A&M University, College Station, TX 77843, USA.
Texas A&M University · USBoston Children's Hospital · US

Funding

Cell Survival Advantage in Cadmium Induced CarcinogenesisR01ES030019 · NIEHS · UNIVERSITY OF LOUISVILLE · PI DAMODARAN, CHENDIL · 2019 to 2025
$2.3M
Elucidating the molecular signaling of Cadmium CarcinogenesisR01ES033657 · NIEHS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Chendil Damodaran · 2022 to 2026
$2.0M
The role of autophagy in cadmium induced prostate carcinogenesisR01ES028102 · NIEHS · UNIVERSITY OF LOUISVILLE · PI ANKEM, MURALI, DAMODARAN, CHENDIL · 2018 to 2022
$1.9M
NIEHS NIH HHS R01 ES028102NIEHS NIH HHS R01 ES030019NIEHS NIH HHS R01 ES033657
6 · The paper itself

Abstract

Arsenic (sodium arsenite: NaAsO2) is a potent carcinogen and a known risk factor for the onset of bladder carcinogenesis. The molecular mechanisms that govern arsenic-induced bladder carcinogenesis remain unclear. We used a physiological concentration of NaAsO2 (250 nM: 33 µg/L) for the malignant transformation of normal bladder epithelial cells (TRT-HU1), exposed for over 12 months. The increased proliferation and colony-forming abilities of arsenic-exposed cells were seen after arsenic exposure from 4 months onwards. Differential gene expression (DEG) analysis revealed that a total of 1558 and 1943 (padj < 0.05) genes were deregulated in 6-month and 12-month arsenic-exposed TRT-HU1 cells. The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that cell proliferation and survival pathways, such as the MAPK, PI3K/AKT, and Hippo signaling pathways, were significantly altered. Pathway analysis revealed that the enrichment of stem cell activators such as ALDH1A1, HNF1b, MAL, NR1H4, and CDH1 (p < 0.001) was significantly induced during the transformation compared to respective vehicle controls. Further, these results were validated by qPCR analysis, which corroborated the transcriptomic analysis. Overall, the results suggested that stem cell activators may play a significant role in facilitating the arsenic-exposed cells to gain a survival advantage, enabling the healthy epithelial cells to reprogram into a cancer stem cell phenotype, leading to malignant transformation.

Indexed as

ArsenicCell Transformation, NeoplasticHumansNeoplastic Stem CellsPhosphatidylinositol 3-KinasesTranscriptomeUrinary BladderArsenicPhosphatidylinositol 3-Kinasesarsenicbladder cancerdifferential gene expressionKEGG and GO enrichmentstem cells

Identifiers

PMID35954277
PMCPMC9367831
OpenAlexW4290466596

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.