Evidence map›Paper›PMID 35953767›Full record

ArticleBMC genomics2022

Assessment of DNA methylation in porcine immune cells reveals novel regulatory elements associated with cell-specific gene expression and immune capacity traits.

Ryan J Corbett, Andrea M Luttman, Juber Herrera-Uribe, Haibo Liu, Nancy E Raney, Jenna M Grabowski, Crystal L Loving, Christopher K Tuggle, Catherine W Ernst

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ryan J CorbettGenetics & Genome Sciences Graduate Program, Michigan State University, East Lansing, MI, USA.
Andrea M LuttmanGenetics & Genome Sciences Graduate Program, Michigan State University, East Lansing, MI, USA.
Juber Herrera-UribeDepartment of Animal Science, Iowa State University, Ames, IA, USA.
Haibo LiuDepartment of Animal Science, Iowa State University, Ames, IA, USA.
Nancy E RaneyDepartment of Animal Science, Michigan State University, East Lansing, MI, USA.
Jenna M GrabowskiDepartment of Animal Science, Michigan State University, East Lansing, MI, USA.
Crystal L LovingUSDA ARS National Animal Disease Center, Ames, IA, USA.
Christopher K TuggleDepartment of Animal Science, Iowa State University, Ames, IA, USA.
Catherine W ErnstDepartment of Animal Science, Michigan State University, East Lansing, MI, USA. ernstc@msu.edu.
Michigan State University · USIowa State University · USNational Animal Disease Center · US

Funding

National Institute of Food and Agriculture 2019-67011-29619
6 · The paper itself

Abstract

backgroundGenetics studies in the porcine immune system have enhanced selection practices for disease resistance phenotypes and increased the efficacy of porcine models in biomedical research; however limited functional annotation of the porcine immunome has hindered progress on both fronts. Among epigenetic mechanisms that regulate gene expression, DNA methylation is the most ubiquitous modification made to the DNA molecule and influences transcription factor binding as well as gene and phenotype expression. Human and mouse DNA methylation studies have improved mapping of regulatory elements in these species, but comparable studies in the pig have been limited in scope.

resultsWe performed whole-genome bisulfite sequencing to assess DNA methylation patterns in nine pig immune cell populations: CD21

conclusionOur DNA methylation data improve functional annotation of the porcine genome through characterization of epigenomic regulatory patterns that contribute to immune cell identity and function, and increase the potential for identifying mechanistic links between genotype and phenotype.

Indexed as

DNA MethylationEpigenesis, GeneticAnimalsCpG IslandsGene ExpressionHumansMicePhenotypeSwineTrans-ActivatorsTrans-ActivatorsDNA MethylationImmune CellsPigWGBS

Identifiers

PMID35953767
PMCPMC9367135
OpenAlexW4291016680

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.