Evidence map›Paper›PMID 35953058›Full record

ArticleThe plant pathology journal2022

Leek Yellow Stripe Virus Can Adjust for Host Adaptation by Trimming the N-Terminal Domain to Allow the P1 Protein to Function as an RNA Silencing Suppressor.

Jun Sasaki, Shusuke Kawakubo, Hangil Kim, Ok-Kyung Kim, Kazuo Yamashita, Hanako Shimura, Chikara Masuta

Open access · goldAbstract read
In one paragraph

Article in The plant pathology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jun SasakiResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
Shusuke KawakuboResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
Hangil KimResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
Ok-Kyung KimDepartment of Agriculture, Faculty of Agriculture, Tokyo University of Agriculture, Atsugi 243-0034, Japan.
Kazuo YamashitaDepartment of Agriculture, Faculty of Agriculture, Tokyo University of Agriculture, Atsugi 243-0034, Japan.
Hanako ShimuraResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
Chikara MasutaResearch Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
Hokkaido University · JPTokyo University of Agriculture · JP

Funding

JSPS KAKENHI 21H02190
6 · The paper itself

Abstract

In Japan, the P1 protein (S-type) encoded by leek yellow stripe virus (LYSV) isolates detected in Honshu and southward is shorter than the P1 (N-type) of LYSV isolates from garlic grown in Hokkaido due to a large deletion in the N-terminal half. In garlic fields in Hokkaido, two types of LYSV isolate with N- and S-type P1s are sometimes found in mixed infections. In this study, we confirmed that N- and S-type P1 sequences were present in the same plant and that they belong to different evolutionary phylogenetic groups. To investigate how LYSV with S-type P1 (LYSV-S) could have invaded LYSV with N-type P1 (LYSV-N)-infected garlic, we examined wild Allium spp. plants in Hokkaido and found that LYSV was almost undetectable. On the other hand, in Honshu, LYSV-S was detected at a high frequency in Allium spp. other than garlic, suggesting that the LYSV-S can infect a wider host range of Allium spp. compared to LYSV-N. Because P1 proteins of potyviruses have been reported to promote RNA silencing suppressor (RSS) activity of HC-Pro proteins, we analyzed whether the same was true for P1 of LYSV. In onion, contrary to expectation, the P1 protein itself had RSS activity. Moreover, the RSS activity of S-type P1 was considerably stronger than that of N-type P1, suggesting that LYSV P1 may be able to enhance its RSS activity when the deletion is in the N-terminal half and that acquiring S-type P1 may have enabled LYSV to expand its host range.

Indexed as

alliumsgarlicleek yellow stripe virusP1 proteinRNA silencing suppressor

Identifiers

PMID35953058
PMCPMC9372110
OpenAlexW4289341461

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.