Evidence map›Paper›PMID 35951700›Full record

ArticleScience (New York, N.Y.)2022

Prokaryotic innate immunity through pattern recognition of conserved viral proteins.

Linyi Alex Gao, Max E Wilkinson, Jonathan Strecker, Kira S Makarova, Rhiannon K Macrae, Eugene V Koonin, Feng Zhang

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed
39.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 241 citations in OpenAlex.

  1. Molecular control of bacterial immunity.Nature structural & molecular biology · 2026
    Review
  2. How bacterial immune systems sense phage infection.Nature reviews. Microbiology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Bacterial immune systems.Antonie van Leeuwenhoek · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Bacterial and human exonucleases mediate interkingdom antiviral immunity.bioRxiv : the preprint server for biology · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Balancing of immune activation and suppression during phage infection.bioRxiv : the preprint server for biology · 2026
    Article
  18. Article
  19. Article
  20. Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Linyi Alex Gao *Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0002-3579-0327
Max E Wilkinson *Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0003-4738-9503
Jonathan Strecker *Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0001-8953-5615
Kira S MakarovaNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.ORCID 0000-0002-8174-2844
Rhiannon K MacraeHoward Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0002-7850-9056
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.ORCID 0000-0003-3943-8299
Feng ZhangHoward Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0003-0178-7995
Broad Institute · USNational Institutes of Health · US

Funding

Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
Programmable RNA-targeting toolsR01HG009761 · NHGRI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2024
$7.5M
Exploration of Diverse Mobile Genetic Elements for Precision Genome ManipulationDP1HL141201 · NHLBI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2021
$6.2M
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG009761NHLBI NIH HHS DP1 HL141201
6 · The paper itself

Abstract

Many organisms have evolved specialized immune pattern-recognition receptors, including nucleotide-binding oligomerization domain-like receptors (NLRs) of the STAND superfamily that are ubiquitous in plants, animals, and fungi. Although the roles of NLRs in eukaryotic immunity are well established, it is unknown whether prokaryotes use similar defense mechanisms. Here, we show that antiviral STAND (Avs) homologs in bacteria and archaea detect hallmark viral proteins, triggering Avs tetramerization and the activation of diverse N-terminal effector domains, including DNA endonucleases, to abrogate infection. Cryo-electron microscopy reveals that Avs sensor domains recognize conserved folds, active-site residues, and enzyme ligands, allowing a single Avs receptor to detect a wide variety of viruses. These findings extend the paradigm of pattern recognition of pathogen-specific proteins across all three domains of life.

Indexed as

ArchaeaArchaeal ProteinsBacteriaBacterial ProteinsImmunity, InnateNLR ProteinsReceptors, Pattern RecognitionViral ProteinsAnimalsBacteriophagesCryoelectron MicroscopyPhylogenyArchaeal ProteinsBacterial ProteinsNLR ProteinsReceptors, Pattern RecognitionViral Proteins

Identifiers

PMID35951700
PMCPMC10028730
OpenAlexW4293298428

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.