Evidence map›Paper›PMID 35951154›Full record

ArticleGenes & genomics2022

Gene profiling in dorso-ventral patterning of mouse tongue development.

Tae-Young Kim, Hyun-Geuk Jung, Elina Pokharel, Ji-Youn Kim, Jung-Hong Ha, Seo-Young An, Chang-Hyeon An, Wern-Joo Sohn, Jae-Kwang Jung, Yam Prasad Aryal and 1 more

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In one paragraph

Article in Genes & genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Tae-Young KimDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, 2177 Dalgubeol-daero, Jung-gu, 41940, Daegu, Korea.
Hyun-Geuk JungDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, 2177 Dalgubeol-daero, Jung-gu, 41940, Daegu, Korea.
Elina PokharelDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, 2177 Dalgubeol-daero, Jung-gu, 41940, Daegu, Korea.
Ji-Youn KimDepartment of Dental Hygiene, Gachon University, Incheon, Korea.
Jung-Hong HaDepartment of Conservative Dentistry, School of Dentistry, Kyungpook National University, Daegu, Korea.
Seo-Young AnDepartment of Oral and Maxillofacial Radiology, School of Dentistry, Kyungpook National University, Daegu, Korea.
Chang-Hyeon AnDepartment of Oral and Maxillofacial Radiology, School of Dentistry, Kyungpook National University, Daegu, Korea.
Wern-Joo SohnPre-Major of Cosmetics and Pharmaceutics, Daegu Haany University, Gyeongsan, Korea.
Jae-Kwang JungDepartment of Oral Medicine, School of Dentistry, Kyungpook National University, Daegu, Korea.
Yam Prasad AryalDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, 2177 Dalgubeol-daero, Jung-gu, 41940, Daegu, Korea. yparyal86@gmail.com.
Jae-Young KimDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, 2177 Dalgubeol-daero, Jung-gu, 41940, Daegu, Korea. jykim91@knu.ac.kr.ORCID 0000-0002-6752-5683
Kyungpook National University · KRGachon University · KRDaegu Haany University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe tongue is a muscular fleshy organ in the oral cavity that is anatomically divided into the dorsal, ventral, anterior, and posterior part. The intricate tissue organisation and diverse origins of the tongue make it a complex organ of the oral cavity.

objectivesTo reveal the signalling molecules involved in the formation of the dorsal and ventral parts of the tongue through microarray analysis.

methodsDorsal and ventral tongue tissues were isolated from embryonic day 14 mice by micro-dissection. RNA was extracted from the dorsal and ventral tongue tissues separately for microarray analysis. Microarray data were confirmed by quantitative reverse transcription polymerase chain reaction and whole-mount in situ hybridisation.

resultsMicroarray analysis revealed expression of 33,793 genes. Of these, 931 genes were found to be equally expressed in both the dorsal and ventral parts of the tongue. On limiting the fold-change cut-off to over 1.5-fold, 725 genes were expressed over 1.5-fold in the ventral part and 1,672 in the dorsal part of the tongue. The qPCR and whole-mount in situ hybridisation revealed the expressions of angiopoietin 2 (Angpt2), fibroblast growth factor 18 (Fgf18), mesenchyme homeobox gene1 (Meox1), and SPARC-related modular calcium binding 2 (Smoc2) in the ventral part of the tongue.

conclusionsNumerous signalling molecules can be selected from our microarray results to examine their roles in tongue development and disease model systems. In the near future, the selection of candidate genes and their functional evaluations will be performed through loss- and gain-of-function mutation studies.

Indexed as

Angiopoietin-2CalciumAnimalsMiceOrganogenesisRNATongueAngiopoietin-2CalciumRNAAngpt2Fgf18Meox1Microarray analysisSmoc2Tongue

Identifiers

PMID35951154
OpenAlexW4292745273

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.