Evidence map›Paper›PMID 35950862›Full record

ArticleMicrobiology spectrum2022

Using Shotgun Sequencing to Describe the Changes Induced by In-Feed Zinc Oxide and Apramycin in the Microbiomes of Pigs One Week Postweaning.

Juan M Ortiz Sanjuán, Edgar G Manzanilla, Raúl Cabrera-Rubio, Fiona Crispie, Paul D Cotter, Juan J Garrido, Héctor Argüello

Open access · goldAbstract readRandomized Controlled Trial, Veterinary
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
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  6. Article
  7. Animals : an open access journal from MDPI · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Juan M Ortiz SanjuánPig Development Department, Teagasc Grassland Research and Innovation Centre, Moorepark, Fermoy, County Cork, Ireland.ORCID 0000-0001-7697-2277
Edgar G ManzanillaPig Development Department, Teagasc Grassland Research and Innovation Centre, Moorepark, Fermoy, County Cork, Ireland.
Raúl Cabrera-RubioTeagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland.
Fiona CrispieTeagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland.
Paul D CotterTeagasc Food Research Centre, Moorepark, Fermoy, County Cork, Ireland.ORCID 0000-0002-5465-9068
Juan J GarridoGrupo de Genómica y Mejora Animal, Departamento de Genética, Facultad de Veterinaria, Universidad de Córdoba, Córdoba, Spain.
Héctor ArgüelloAnimal Health Department, Veterinary Faculty, Universidad de León, León, Spain.
Teagasc - The Irish Agriculture and Food Development Authority · IEUniversidad de León · ESUniversity College Dublin · IEUniversity of Córdoba · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Postweaning diarrhea (PWD) is a relevant problem associated with early weaning on pig farms. For decades, in-feed antibiotics and therapeutic zinc oxide (ZnO) have been widely used to prevent PWD in piglets. The European Union is banning both strategies in 2022 due to antimicrobial resistance and environmental contamination concerns, respectively. Understanding the effects of these products on the pig microbiome is crucial for correcting potential microbial disbalances that would prompt PWD. Using shotgun sequencing, three trials were carried out to explore the impact of in-feed apramycin and ZnO, combined with different farm hygiene protocols, on the fecal microbiomes of piglets 7 days postweaning. In trial 1, 28-day-old piglets were allocated to one of three groups: control diet (Ct), Ct + ZnO (Zn), and Ct + apramycin (Ab). In trials 2 and 3, piglets were allocated to the same treatments, but the trials also included different cleaning protocols, achieving different hygiene levels. In-feed treatments impacted the richness, diversity, and relative abundance of the piglets' microbiome more than hygiene. Pigs in the Ct group showed higher species richness than pigs in the Ab and Zn groups. A clustering analysis evidenced a link between

Indexed as

Gastrointestinal MicrobiomeZinc OxideAnimalsAnti-Bacterial AgentsDiarrheaEscherichia coliNebramycinSwineAnti-Bacterial AgentsapramycinNebramycinZinc Oxideantibioticsdiarrheametagenomicspigsswineweaningzinc oxide

Identifiers

PMID35950862
PMCPMC9431492
OpenAlexW4290804165

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.