Evidence map›Paper›PMID 35950452›Full record

ReviewMolecules and cells2022

Z-DNA-Containing Long Terminal Repeats of Human Endogenous Retrovirus Families Provide Alternative Promoters for Human Functional Genes.

Du Hyeong Lee, Woo Hyeon Bae, Hongseok Ha, Eun Gyung Park, Yun Ju Lee, Woo Ryung Kim, Heui-Soo Kim

Open access · diamondAbstract readReview
In one paragraph

Review in Molecules and cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Formation and biological implications of Z-DNA.Trends in genetics : TIG · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Du Hyeong LeeDepartment of Integrated Biological Sciences, Pusan National University, Busan 46241, Korea.ORCID https://orcid.org/0000-0001-8403-4395
Woo Hyeon BaeDepartment of Integrated Biological Sciences, Pusan National University, Busan 46241, Korea.ORCID https://orcid.org/0000-0003-0126-8271
Hongseok HaDivision of Life Sciences, Korea University, Seoul 02841, Korea.ORCID https://orcid.org/0000-0002-0923-9187
Eun Gyung ParkDepartment of Integrated Biological Sciences, Pusan National University, Busan 46241, Korea.ORCID https://orcid.org/0000-0002-9575-7043
Yun Ju LeeDepartment of Integrated Biological Sciences, Pusan National University, Busan 46241, Korea.ORCID https://orcid.org/0000-0002-4578-3323
Woo Ryung KimDepartment of Integrated Biological Sciences, Pusan National University, Busan 46241, Korea.ORCID https://orcid.org/0000-0003-1840-4444
Heui-Soo KimDepartment of Biological Sciences, College of Natural Sciences, Pusan National University, Busan 46231, Korea.ORCID https://orcid.org/0000-0002-5226-6594
Pusan National University · KRKorea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) account for approximately 45% of the human genome. TEs have proliferated randomly and integrated into functional genes during hominoid radiation. They appear as right-handed B-DNA double helices and slightly elongated left-handed Z-DNAs. Human endogenous retrovirus (HERV) families are widely distributed in human chromosomes at a ratio of 8%. They contain a 5'-long terminal repeat (LTR)-gag-pol-env-3'-LTR structure. LTRs contain the U3 enhancer and promoter region, transcribed R region, and U5 region. LTRs can influence host gene expression by acting as regulatory elements. In this review, we describe the alternative promoters derived from LTR elements that overlap Z-DNA by comparing Z-hunt and DeepZ data for human functional genes. We also present evidence showing the regulatory activity of LTR elements containing Z-DNA in

Indexed as

DNA, Z-FormEndogenous RetrovirusesHumansPromoter Regions, GeneticTerminal Repeat SequencesDNA, Z-Formgene functionhuman diseaseshuman endogenous retroviruslong terminal repeat elementsZ-DNA

Identifiers

PMID35950452
PMCPMC9385571
OpenAlexW4291004556

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.