Evidence map›Paper›PMID 35949182›Full record

ArticleThe EMBO journal2022

Binary organization of epidermal basal domains highlights robustness to environmental exposure.

Sangeeta Ghuwalewala, Seon A Lee, Kevin Jiang, Joydeep Baidya, Gopal Chovatiya, Pritinder Kaur, David Shalloway, Tudorita Tumbar

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. YAP/TAZ Signalling Controls Epidermal Keratinocyte Fate.International journal of molecular sciences · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Matricellular Proteins in the Homeostasis, Regeneration, and Aging of Skin.International journal of molecular sciences · 2023
    Review
  16. Blank Spots in the Map of Human Skin: The Challenge for Xenotransplantation.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sangeeta Ghuwalewala *Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.ORCID 0000-0003-1897-8165
Seon A Lee *Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-0124-6964
Kevin JiangDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.ORCID 0000-0003-3258-4445
Joydeep BaidyaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.ORCID 0000-0003-1396-1786
Gopal ChovatiyaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-0993-8877
Pritinder KaurCurtin Medical School/Curtin Health Innovation Research Institute, Curtin University, Perth, WA, Australia.ORCID 0000-0002-4994-2782
David ShallowayDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.
Tudorita TumbarDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-2273-1889
Cornell University · USCurtin University · AU

Funding

Tissue regeneration studies by controlled H3 K4/9/27me3 levels in adult mouse skinR01AR073806 · NIAMS · CORNELL UNIVERSITY · PI JOHN T LIS, Tudorita Tumbar · 2018 to 2026
$3.9M
Defining the heterogeneity of cell lineages in the inter-follicular epidermisR01AR070157 · NIAMS · CORNELL UNIVERSITY · PI Tudorita Tumbar · 2017 to 2026
$3.8M
Zeiss LSM710 Confocal Microscope for Shared Imaging FacilityS10RR025502 · NCRR · CORNELL UNIVERSITY · PI WILLIAMS, REBECCA M · 2009 to 2009
$500k
NCRR NIH HHS S10 RR025502NIAMS NIH HHS R01 AR070157NIAMS NIH HHS R01 AR073806
6 · The paper itself

Abstract

Adulte interfollicular epidermis (IFE) renewal is likely orchestrated by physiological demands of its complex tissue architecture comprising spatial and cellular heterogeneity. Mouse tail and back skin display two kinds of basal IFE spatial domains that regenerate at different rates. Here, we elucidate the molecular and cellular states of basal IFE domains by marker expression and single-cell transcriptomics in mouse and human skin. We uncover two paths of basal cell differentiation that in part reflect the IFE spatial domain organization. We unravel previously unrecognized similarities between mouse tail IFE basal domains defined as scales and interscales versus human rete ridges and inter-ridges, respectively. Furthermore, our basal IFE transcriptomics and gene targeting in mice provide evidence supporting a physiological role of IFE domains in adaptation to differential UV exposure. We identify Sox6 as a novel UV-induced and interscale/inter-ridge preferred basal IFE-domain transcription factor, important for IFE proliferation and survival. The spatial, cellular, and molecular organization of IFE basal domains underscores skin adaptation to environmental exposure and its unusual robustness in adult homeostasis.

Indexed as

Epidermal CellsEpidermisAdultAnimalsCell DifferentiationEnvironmental ExposureHumansMiceSkinepidermal domainshuman skinscRNA-seqSox6UV

Identifiers

PMID35949182
PMCPMC9475544
OpenAlexW4291019154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.