Evidence map›Paper›PMID 35947651›Full record

ArticleScience advances2022

Highly multiplexed, label-free proteoform imaging of tissues by individual ion mass spectrometry.

Pei Su, John P McGee, Kenneth R Durbin, Michael A R Hollas, Manxi Yang, Elizabeth K Neumann, Jamie L Allen, Bryon S Drown, Fatma Ayaloglu Butun, Joseph B Greer and 7 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Integrating Spatial Proteogenomics in Cancer Research.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  6. Probing Proteoform Heterogeneity From Single Human Oocytes.Molecular & cellular proteomics : MCP · 2026
    Article
  7. Article
  8. Review
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  11. Article
  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Pei SuDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-6148-0181
John P McGeeDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-0527-8904
Kenneth R DurbinDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-7163-4877
Michael A R HollasDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-0797-3134
Manxi YangDepartment of Chemistry, Purdue University, West Lafayette, IN, USA.ORCID 0000-0003-0589-1757
Elizabeth K NeumannDepartment of Biochemistry and Mass Spectrometry Research Center, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-6078-3321
Jamie L AllenDepartment of Biochemistry and Mass Spectrometry Research Center, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-4739-2166
Bryon S DrownDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-5631-512X
Fatma Ayaloglu ButunProteomics Center of Excellence, Northwestern University, Evanston, IL, USA.
Joseph B GreerDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-3865-9279
Bryan P EarlyDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.
Ryan T FellersDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-0710-3462
Jeffrey M SpragginsDepartment of Biochemistry and Mass Spectrometry Research Center, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0001-9198-5498
Julia LaskinDepartment of Chemistry, Purdue University, West Lafayette, IN, USA.ORCID 0000-0002-4533-9644
Jeannie M CamarilloDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-9699-0931
Jared O KafaderDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-5359-264X
Neil L KelleherDepartments of Molecular Biosciences, Chemistry, and Chemical and Biological Engineering and the Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-8815-3372
Northwestern University · USVanderbilt University · USPurdue University West Lafayette · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Devalingam Mahalingam · 1993 to 2026
$153.9M
The UIUC Neuroproteomics Center on Cell-Cell SignalingP30DA018310 · NIDA · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI Jonathan V. Sweedler · 2004 to 2026
$24.9M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Tennessee Valley Cooperative Human Tissue NetworkUM1CA183727 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MARY Kay WASHINGTON · 2014 to 2026
$12.6M
Vanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Mapping of the Human KidneyU54DK134302 · NIDDK · VANDERBILT UNIVERSITY · PI CAPRIOLI, RICHARD M, SPRAGGINS, JEFFREY M · 2022 to 2025
$7.1M
Vanderbilt University Biomolecular Multimodal Imaging Center for 3-Dimensional Tissue MappingU54DK120058 · NIDDK · VANDERBILT UNIVERSITY · PI HARRIS, RAYMOND C. · 2018 to 2021
$5.7M
Renewable and Specific Affinity Reagents for Mapping Proteoforms in Human TissuesUH3CA246635 · NCI · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2019 to 2021
$1.4M
Novel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass SpectrometryUH3CA255132 · NCI · PURDUE UNIVERSITY · PI LASKIN, JULIA · 2020 to 2021
$1.3M
Top-down proteomic characterization of MEK/ERK in MAPK-driven cancersF32CA246894 · NCI · NORTHWESTERN UNIVERSITY · PI DROWN, BRYON SHANE · 2020 to 2021
$128k
NCI NIH HHS F32 CA246894NCI NIH HHS P30 CA060553NCI NIH HHS UH3 CA246635NCI NIH HHS UH3 CA255132NCI NIH HHS UM1 CA183727NIDA NIH HHS P30 DA018310NIDDK NIH HHS U54 DK120058NIDDK NIH HHS U54 DK134302NIEHS NIH HHS T32 ES007028NIGMS NIH HHS P41 GM108569
6 · The paper itself

Abstract

Imaging of proteoforms in human tissues is hindered by low molecular specificity and limited proteome coverage. Here, we introduce proteoform imaging mass spectrometry (PiMS), which increases the size limit for proteoform detection and identification by fourfold compared to reported methods and reveals tissue localization of proteoforms at <80-μm spatial resolution. PiMS advances proteoform imaging by combining ambient nanospray desorption electrospray ionization with ion detection using individual ion mass spectrometry. We demonstrate highly multiplexed proteoform imaging of human kidney, annotating 169 of 400 proteoforms of <70 kDa using top-down MS and a database lookup of ~1000 kidney candidate proteoforms, including dozens of key enzymes in primary metabolism. PiMS images reveal distinct spatial localizations of proteoforms to both anatomical structures and cellular neighborhoods in the vasculature, medulla, and cortex regions of the human kidney. The benefits of PiMS are poised to increase proteome coverage for label-free protein imaging of tissues.

Identifiers

PMID35947651
PMCPMC9365283
OpenAlexW4291020213

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.