Evidence map›Paper›PMID 35946635›Full record

ArticleRevista da Sociedade Brasileira de Medicina Tropical2022

Molecular characterization of nontuberculous Mycobacteria in a tuberculosis and HIV reference unit in the State of Amazonas, Brazil.

Ana Carolina de Oliveira de Lima, Karen Barros Schmid, Hilda Ferreira de Melo, Rafaella Christine Athayde, Rossiclea Lins Monte, Isabela Neves de Almeida, Silvana Spíndola de Miranda, Afrânio Kritski, Maria Lucia Rossetti, Marcelo Cordeiros-Santos

Open access · diamondAbstract read
In one paragraph

Article in Revista da Sociedade Brasileira de Medicina Tropical, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 1 country.

Ana Carolina de Oliveira de LimaFundação Oswaldo Cruz, Instituto Oswaldo Cruz, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0001-6136-3540
Karen Barros SchmidSecretaria de Estado da Saúde do Rio Grande do Sul, Centro de Desenvolvimento Científico e Tecnológico, Porto Alegre, RS, Brasil.ORCID http://orcid.org/0000-0002-6883-9537
Hilda Ferreira de MeloFundação de Medicina Tropical Dr. Heitor Vieira Dourado, Manaus, AM, Brasil.ORCID http://orcid.org/0000-0003-0987-8138
Rafaella Christine AthaydeFundação de Medicina Tropical Dr. Heitor Vieira Dourado, Manaus, AM, Brasil.ORCID http://orcid.org/0000-0003-0813-7565
Rossiclea Lins MonteFundação de Medicina Tropical Dr. Heitor Vieira Dourado, Manaus, AM, Brasil.ORCID http://orcid.org/0000-0002-2881-8205
Isabela Neves de AlmeidaUniversidade Federal de Ouro Preto, Escola de Farmácia, Departamento de Análises Clínicas, Ouro Preto, MG, Brasil.ORCID http://orcid.org/0000-0001-6152-7648
Silvana Spíndola de MirandaUniversidade Federal de Minas Gerais, Faculdade de Medicina, Departamento de Clínica Médica/Pneumologia/Tisologia, Belo Horizonte, MG, Brasil.ORCID http://orcid.org/0000-0001-7245-4472
Afrânio KritskiUniversidade Federal do Rio de Janeiro, Escola de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0002-5900-6007
Maria Lucia RossettiUniversidade Luterana do Brasil, Programa de Pós-Graduação em Biologia Molecular e Celular, Canoas, RS, Brasil.ORCID http://orcid.org/0000-0002-9672-9394
Marcelo Cordeiros-SantosUniversidade do Estado do Amazonas, Programa de Pós-Graduação em Medicina Tropical, Manaus, AM, Brasil.ORCID http://orcid.org/0000-0002-7140-7145
Fundação de Medicina Tropical · BRSecretaria da Saúde · BRUniversidade do Estado do Amazonas · BRUniversidade Federal de Minas Gerais · BRUniversidade Federal de Ouro Preto · BRUniversidade Federal do Rio de Janeiro · BRUniversidade Luterana do Brasil · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn recent years, the prevalence of nontuberculous mycobacterial (NTM) infections has increased in different regions of the world. The American Thoracic Society (ATS) recommends standardized identification criteria, reinforcing the need for faster and less complicated clinical and laboratory techniques.

methodsIn this retrospective study, NTM species isolated from pulmonary, extrapulmonary, and disseminated samples from patients treated at a TB/HIV reference unit in the State of Amazonas from 2011 to 2014 were identified through a combination of molecular techniques.

resultsTo identify the molecular technique, 50 cryopreserved NTM cultures were recovered and subcultivated in culture medium. The potentially pathogenic NTM species identified were M. avium, M. intracellulare, M. kansasii, M. chelonae, M. abscessus, M. fortuitum, and M. peregrinum. Results of GenoType® showed moderate agreement with those of genomic sequencing (kappa = 0.60), whereas the results obtained by the PRA-hsp65 technique disagreed with the results obtained by sequencing (kappa = 0.49).

conclusionsOur findings highlight that GenoType CM is a good method for the identification of NTM, as well as the need for the application of standardized criteria, such as those set forth by the ATS.

Indexed as

HIV InfectionsMycobacterium Infections, NontuberculousTuberculosisBrazilHumansNontuberculous MycobacteriaRetrospective Studies

Identifiers

PMID35946635
PMCPMC9344947
OpenAlexW4289914633

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.