Evidence map›Paper›PMID 35945219›Full record

ArticleNature communications2022

The SWI/SNF chromatin remodeling factor DPF3 regulates metastasis of ccRCC by modulating TGF-β signaling.

Huanhuan Cui, Hongyang Yi, Hongyu Bao, Ying Tan, Chi Tian, Xinyao Shi, Diwen Gan, Bin Zhang, Weizheng Liang, Rui Chen and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. In-depth analysis of retinal RNA transcriptome sequencing in a rat model of hypertensive retinopathy.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2026
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  9. Validation ofFrontiers in medicine · 2026
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  12. Prioritizing context-specific genetic risk mechanisms in 11 solid cancers.medRxiv : the preprint server for health sciences · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Differential expression of ORAI channels and STIM proteins in renal cell carcinoma subtypes: implications for metastasis and therapeutic targeting.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2025
    Article
  19. Review
  20. TheInternational journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 3 countries.

Huanhuan CuiShenzhen Key Laboratory of Gene Regulation and Systems Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China. cuihh@sustech.edu.cn.ORCID 0000-0002-6190-6135
Hongyang Yi *Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.
Hongyu Bao *Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.
Ying Tan *Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.
Chi Tian *Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.ORCID 0000-0002-6093-5858
Xinyao ShiDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.
Diwen GanDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.ORCID 0000-0003-0185-4131
Bin ZhangComputational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.ORCID 0000-0001-8835-8370
Weizheng LiangDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.
Rui ChenDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.ORCID 0000-0003-3821-0436
Qionghua ZhuShenzhen Key Laboratory of Gene Regulation and Systems Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.
Liang FangShenzhen Key Laboratory of Gene Regulation and Systems Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.ORCID 0000-0003-4502-1756
Xin GaoComputational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.ORCID 0000-0002-7108-3574
Hongda HuangDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.ORCID 0000-0001-6741-7677
Ruijun TianDepartment of Chemistry, School of Science, Southern University of Science and Technology, Shenzhen, 518005, China.ORCID 0000-0001-9521-5124
Silke R SperlingCardiovascular Genetics, Charité-Universitätsmedizin Berlin, 13125, Berlin, Germany.ORCID 0000-0002-7135-3298
Yuhui HuShenzhen Key Laboratory of Gene Regulation and Systems Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China.ORCID 0000-0002-5210-5301
Wei ChenShenzhen Key Laboratory of Gene Regulation and Systems Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518005, China. chenw@sustech.edu.cn.ORCID 0000-0003-3263-1627
Southern University of Science and Technology · CNKing Abdullah University of Science and Technology · SACharité - Universitätsmedizin Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DPF3, a component of the SWI/SNF chromatin remodeling complex, has been associated with clear cell renal cell carcinoma (ccRCC) in a genome-wide association study. However, the functional role of DPF3 in ccRCC development and progression remains unknown. In this study, we demonstrate that DPF3a, the short isoform of DPF3, promotes kidney cancer cell migration both in vitro and in vivo, consistent with the clinical observation that DPF3a is significantly upregulated in ccRCC patients with metastases. Mechanistically, DPF3a specifically interacts with SNIP1, via which it forms a complex with SMAD4 and p300 histone acetyltransferase (HAT), the major transcriptional regulators of TGF-β signaling pathway. Moreover, the binding of DPF3a releases the repressive effect of SNIP1 on p300 HAT activity, leading to the increase in local histone acetylation and the activation of cell movement related genes. Overall, our findings reveal a metastasis-promoting function of DPF3, and further establish the link between SWI/SNF components and ccRCC.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsSignal TransductionChromatinChromatin Assembly and DisassemblyDNA-Binding ProteinsGenome-Wide Association StudyHumansTranscription FactorsTransforming Growth Factor betaChromatinDNA-Binding ProteinsDPF3 protein, humanTranscription FactorsTransforming Growth Factor beta

Identifiers

PMID35945219
PMCPMC9363427
OpenAlexW4291020127

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.