Evidence map›Paper›PMID 35945210›Full record

ArticleNature communications2022

A suite of PCR-LwCas13a assays for detection and genotyping of Treponema pallidum in clinical samples.

Wentao Chen, Hao Luo, Lihong Zeng, Yuying Pan, Jonathan B Parr, Yinbo Jiang, Clark H Cunningham, Kelly L Hawley, Justin D Radolf, Wujian Ke and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Wentao Chen *Dermatology Hospital, Southern Medical University, Guangzhou, P. R. China.ORCID http://orcid.org/0000-0002-4062-3865
Hao Luo *Dermatology Hospital, Southern Medical University, Guangzhou, P. R. China.ORCID http://orcid.org/0000-0001-5463-9852
Lihong ZengDermatology Hospital, Southern Medical University, Guangzhou, P. R. China.
Yuying PanDermatology Hospital, Southern Medical University, Guangzhou, P. R. China.
Jonathan B ParrDivision of Infectious Diseases, Department of Medicine, and Institute for Global Health and Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-4465-9830
Yinbo JiangDermatology Hospital, Southern Medical University, Guangzhou, P. R. China.
Clark H CunninghamDivision of Infectious Diseases, Department of Medicine, and Institute for Global Health and Infectious Diseases, University of North Carolina, Chapel Hill, NC, USA.
Kelly L HawleyDivision of Infectious Diseases, Connecticut Children's, Hartford, CT, USA.
Justin D RadolfDepartment of Medicine, UConn Health, Farmington, CT, USA.
Wujian KeDermatology Hospital, Southern Medical University, Guangzhou, P. R. China.
Jiangli OuDermatology Hospital, Southern Medical University, Guangzhou, P. R. China.
Jianjiang YangDermatology Hospital, Southern Medical University, Guangzhou, P. R. China.
Bin YangDermatology Hospital, Southern Medical University, Guangzhou, P. R. China. yangbin1@smu.edu.cn.
Heping ZhengDermatology Hospital, Southern Medical University, Guangzhou, P. R. China. zhengheping@smu.edu.cn.ORCID http://orcid.org/0000-0002-9846-975X
Southern Medical University · CNGuangzhou Center for Disease Control and Prevention · CNUniversity of North Carolina at Chapel Hill · USConnecticut Children's Medical Center · USUConn Health · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008719 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DARVILLE, TONI, DESHMUKH, MOHANISH P · 1999 to 2023
$15.1M
Prevalence of syphilis and other sexually transmitted infections in men and transgender women who have sex with men in Cali, ColombiaU19AI144177 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI RADOLF, JUSTIN D · 2019 to 2023
$11.2M
Development of novel diagnostics for African non-falciparum malariaR21AI148579 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIN, JESSICA, PARR, JONATHAN BOYD · 2020 to 2021
$420k
NIAID NIH HHS R21 AI148579NIAID NIH HHS U19 AI144177NIGMS NIH HHS T32 GM008719
6 · The paper itself

Abstract

The performance of commonly used assays for diagnosis of syphilis varies considerably depending on stage of infection and sample type. In response to the need for improved syphilis diagnostics, we develop assays that pair PCR pre-amplification of the tpp47 gene of Treponema pallidum subsp. pallidum with CRISPR-LwCas13a. The PCR-LwCas13a assay achieves an order of magnitude better analytical sensitivity than real-time PCR with equivalent specificity. When applied to a panel of 216 biological specimens, including 135 clinically confirmed primary and secondary syphilis samples, the PCR-LwCas13a assay demonstrates 93.3% clinical sensitivity and 100% specificity, outperforming tpp47 real-time PCR and rabbit-infectivity testing. We further adapt this approach to distinguish Treponema pallidum subsp. pallidum lineages and identify genetic markers of macrolide resistance. Our study demonstrates the potential of CRISPR-based approaches to improve diagnosis and epidemiological surveillance of syphilis.

Indexed as

SyphilisTreponema pallidumAnimalsAnti-Bacterial AgentsDrug Resistance, BacterialGenotypeMacrolidesRabbitsReal-Time Polymerase Chain ReactionSensitivity and SpecificityTreponemaAnti-Bacterial AgentsMacrolides

Identifiers

PMID35945210
PMCPMC9362966
OpenAlexW4291019903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.