Evidence map›Paper›PMID 35943978›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Global patterns of antigen receptor repertoire disruption across adaptive immune compartments in COVID-19.

Magdalene Joseph, Yin Wu, Richard Dannebaum, Florian Rubelt, Iva Zlatareva, Anna Lorenc, Zhipei Gracie Du, Daniel Davies, Fernanda Kyle-Cezar, Abhishek Das and 31 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

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  5. Aging and Inflammation.Cold Spring Harbor perspectives in medicine · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 5 institutions in 2 countries.

Magdalene JosephPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0001-8182-0059
Yin WuPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0003-4080-3935
Richard DannebaumRoche Diagnostics Solutions, Pleasanton, CA, 94588.
Florian RubeltRoche Diagnostics Solutions, Pleasanton, CA, 94588.ORCID 0000-0001-7593-5511
Iva ZlatarevaPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Anna LorencPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Zhipei Gracie DuRoche Diagnostics Solutions, Pleasanton, CA, 94588.
Daniel DaviesPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Fernanda Kyle-CezarPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Abhishek DasPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0002-8798-035X
Sarah GeePeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Jeffrey SeowDepartment of Infectious Diseases, School of Immunology & Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Carl GrahamDepartment of Infectious Diseases, School of Immunology & Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Dilduz TelmanRoche Diagnostics Solutions, Pleasanton, CA, 94588.
Clara BermejoRoche Diagnostics Solutions, Pleasanton, CA, 94588.ORCID 0000-0002-6749-9585
Hai LinRoche Diagnostics Solutions, Pleasanton, CA, 94588.
Hosseinali AsgharianRoche Diagnostics Solutions, Pleasanton, CA, 94588.
Adam G LaingPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0003-0112-2280
Irene Del Molino Del BarrioPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Leticia MoninImmunosurveillance Laboratory, The Francis Crick Institute, London, NW1 1AT, United Kingdom.ORCID 0000-0002-4951-8105
Miguel Muñoz-RuizImmunosurveillance Laboratory, The Francis Crick Institute, London, NW1 1AT, United Kingdom.
Duncan R McKenzieImmunosurveillance Laboratory, The Francis Crick Institute, London, NW1 1AT, United Kingdom.
Thomas S HaydayPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0003-2268-5250
Isaac Francos-QuijornaRegeneration Group, Wolfson Centre for Age-Related Diseases, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, SE5 8AB, United Kingdom.ORCID 0000-0003-2514-4206
Shraddha KamdarPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0003-2689-9723
Richard DavisPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Vasiliki SofraPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Florencia CanoImmunosurveillance Laboratory, The Francis Crick Institute, London, NW1 1AT, United Kingdom.
Efstathios TheodoridisPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Lauren MartinezResearch and Development Department, Guy's and St. Thomas' NHS Foundation Trust, London, SE1 7EH, United Kingdom.ORCID 0000-0002-5830-2496
Blair MerrickCentre for Clinical Infection and Diagnostics Research, Department of Infectious Diseases, Guy's and St Thomas' NHS Foundation Trust, London, SE1 7EH, United Kingdom.ORCID 0000-0002-6061-6064
Karen BisnauthsingResearch and Development Department, Guy's and St. Thomas' NHS Foundation Trust, London, SE1 7EH, United Kingdom.ORCID 0000-0001-9045-1064
Kate BrooksResearch and Development Department, Guy's and St. Thomas' NHS Foundation Trust, London, SE1 7EH, United Kingdom.
Jonathan EdgeworthDepartment of Infectious Diseases, School of Immunology & Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
John CasonInfectious Diseases Biobank, Department of Infectious Diseases, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Christine MantInfectious Diseases Biobank, Department of Infectious Diseases, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0002-1454-1823
Katie J DooresDepartment of Infectious Diseases, School of Immunology & Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.
Pierre VantouroutPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0001-7287-5517
Khai LuongRoche Diagnostics Solutions, Pleasanton, CA, 94588.
Jan BerkaRoche Diagnostics Solutions, Pleasanton, CA, 94588.ORCID 0000-0002-5628-3906
Adrian C HaydayPeter Gorer Department of Immunobiology, School of Immunology and Microbial Sciences, King's College London, London, SE1 9RT, United Kingdom.ORCID 0000-0002-9495-5793
King's College London · GBRoche (United States) · USGuy's and St Thomas' NHS Foundation Trust · GBThe Francis Crick Institute · GBRoyal Free London NHS Foundation Trust · GB

Funding

Cancer Research UK FC001093Cancer Research UK (CRUK) C604/A27440Department of HealthMedical Research Council FC001093Medical Research Council MR/N013700/1Medical Research Council MR/V040162/1UK COVID-Immunology-Consortium C33499/A20265Wellcome Trust 220589/Z/20/ZWellcome Trust FC001093Wellcome Trust (WT) 106292/Z/14/ZWellcome Trust (WT) 20589/Z/20/Z
6 · The paper itself

Abstract

Whereas pathogen-specific T and B cells are a primary focus of interest during infectious disease, we have used COVID-19 to ask whether their emergence comes at a cost of broader B cell and T cell repertoire disruption. We applied a genomic DNA-based approach to concurrently study the immunoglobulin-heavy (IGH) and T cell receptor (TCR) β and δ chain loci of 95 individuals. Our approach detected anticipated repertoire focusing for the IGH repertoire, including expansions of clusters of related sequences temporally aligned with SARS-CoV-2-specific seroconversion, and enrichment of some shared SARS-CoV-2-associated sequences. No significant age-related or disease severity-related deficiencies were noted for the IGH repertoire. By contrast, whereas focusing occurred at the TCRβ and TCRδ loci, including some TCRβ sequence-sharing, disruptive repertoire narrowing was almost entirely limited to many patients aged older than 50 y. By temporarily reducing T cell diversity and by risking expansions of nonbeneficial T cells, these traits may constitute an age-related risk factor for COVID-19, including a vulnerability to new variants for which T cells may provide key protection.

Indexed as

Adaptive ImmunityCOVID-19Immunoglobulin Heavy ChainsReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaSARS-CoV-2AgedB-LymphocytesGenetic LociHumansSeroconversionT-LymphocytesImmunoglobulin Heavy ChainsReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaadaptive immune responsesantigen-receptor repertoiresimmunoPETEnext-generation sequencingSARS-CoV-2

Identifiers

PMID35943978
PMCPMC9407655
OpenAlexW4291019297

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.