ArticlemSystems2022
Host Plant Selection Imprints Structure and Assembly of Fungal Community along the Soil-Root Continuum.
Article in mSystems, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 32 citations in OpenAlex.
- Article
- Soil acidification dismantles a citrulline-mediated microbe-metabolite-host defense axis in watermelon, exacerbating Fusarium wilt.NPJ biofilms and microbiomes · 2026Article
- Root-Driven Filtering Overrides Biochar and Microbial Inoculants in Structuring Bacterial Assemblages of Seawater Rice Cultivation Ecosystem in a Saline-Alkali Soil.Microorganisms · 2026Article
- Ecological and functional roles of plant microbiomes in environmental detoxification.Frontiers in microbiology · 2026Review
- Phytomycobiomes and Ecosystem Services: Mechanisms, Evidence and Routes to Application.Journal of fungi (Basel, Switzerland) · 2025Review
- The Influence of Agroecological Intensification on Dominant and Rare Microbial Communities Across Diverse European Countries.Microbial ecology · 2025Article
- Conserved and Specific Root-Associated Microbiome Reveals Close Correlation Between Fungal Community and Growth Traits of Multiple Chinese Fir Genotypes.Microorganisms · 2025Article
- Parasitic plant Cistanche tubulosa shapes the bacterial community structure and functional composition of the salt-tolerant host Tamarix chinensis across different parasitic statuses.Environmental microbiome · 2025Article
- Rootstock microbiome as a target for manipulation to combat apple replant disease.Scientific reports · 2025Article
- Pandan-vanilla rotation mitigatesFrontiers in microbiology · 2025Article
- Article
- Article
- Bacterial wilt affects the structure and assembly of microbial communities along the soil-root continuum.Environmental microbiome · 2024Article
- Changes in Diversity and Composition of Rhizosphere Bacterial and Fungal Community between Resistant and Susceptible Pakchoi underInternational journal of molecular sciences · 2023Article
- Soil bacterial communities of paddy are dependent on root compartment niches but independent of growth stages from Mollisols of Northeast China.Frontiers in microbiology · 2023Article
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The soil fungal community plays pivotal roles in soil nutrient cycling and plant health and productivity in agricultural ecosystems. However, the differential adaptability of soil fungi to different microenvironments (niches) is a bottleneck limiting their application in agriculture. Hence, the understanding of ecological processes that drive fungal microbiome assembly along the soil-root continuum is fundamental to harnessing the plant-associated microbiome for sustainable agriculture. Here, we investigated the factors that shape fungal community structure and assembly in three compartment niches (the bulk soil, rhizosphere, and rhizoplane) associated with tobacco (Nicotiana tabacum L.), with four soil types tested under controlled greenhouse conditions. Our results demonstrate that fungal community assembly along the soil-root continuum is governed by host plant rather than soil type and that soil chemical properties exert a negligible effect on the fungal community assembly in the rhizoplane. Fungal diversity and network complexity decreased in the order bulk soil > rhizosphere > rhizoplane, with a dramatic decrease in Ascomycota species number and abundance along the soil-root continuum. However, facilitations (positive interactions) were enhanced among fungal taxa in the rhizoplane niche. The rhizoplane supported species specialization with enrichment of some rare species, contributing to assimilative community assembly in the rhizoplane in all soil types.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.