Evidence map›Paper›PMID 35941697›Full record

ArticleJournal of animal science and biotechnology2022

A significant quantitative trait locus on chromosome Z and its impact on egg production traits in seven maternal lines of meat-type chicken.

Jiqiang Ding, Fan Ying, Qinghe Li, Gaomeng Zhang, Jin Zhang, Ranran Liu, Maiqing Zheng, Jie Wen, Guiping Zhao

Open access · goldAbstract read
In one paragraph

Article in Journal of animal science and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jiqiang Ding *Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Fan Ying *MiLe Xinguang Agricultural and Animal Industrials Corporation, MiLe, China.
Qinghe LiInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Gaomeng ZhangInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Jin ZhangInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Ranran LiuInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Maiqing ZhengInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Jie WenInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Guiping ZhaoInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China. zhaoguiping@caas.cn.ORCID http://orcid.org/0000-0002-1510-6903
Chinese Academy of Agricultural Sciences · CN

Funding

Guangdong Provincial Key Research and Development Program 2020B02022002The Shandong Agricultural Seed Improvement Project 2020LZGC013
6 · The paper itself

Abstract

backgroundEgg production is economically important in the meat-type chicken industry. To better understand the molecular genetic mechanism of egg production in meat-type chicken, genetic parameter estimation, genome-wide association analyses combined with meta-analyses, Bayesian analyses, and selective sweep analyses were performed to screen single nucleotide polymorphisms (SNPs) and other genetic loci that were significantly associated with egg number traits in 11,279 chickens from seven material lines.

resultsYellow-feathered meat-type chickens laid 115 eggs at 43 weeks of age and white-feathered chickens laid 143 eggs at 60 weeks of age, with heritability ranging from 0.034-0.258. Based on meta-analyses and selective sweep analyses, one region (10.81-13.05 Mb) on chromosome Z was associated with egg number in all lines. Further analyses using the W2 line was also associated with the same region, and 29 SNPs were identified that significantly affected estimation of breeding value of egg numbers. The 29 SNPs were identified as having a significant effect on the egg number EBV in 3194 birds in line W2. There are 36 genes in the region, with glial cell derived neurotrophic factor, DAB adaptor protein 2, protein kinase AMP-activated catalytic subunit alpha 1, NAD kinase 2, mitochondrial, WD repeat domain 70, leukemia inhibitory factor receptor alpha, complement C6, and complement C7 identified as being potentially affecting to egg number. In addition, three SNPs (rs318154184, rs13769886, and rs313325646) associated with egg number were located on or near the prolactin receptor gene.

conclusionOur study used genomic information from different chicken lines and populations to identify a genomic region (spanning 2.24 Mb) associated with egg number. Nine genes and 29 SNPs were identified as the most likely candidate genes and variations for egg production. These results contribute to the identification of candidate genes and variants for egg traits in poultry.

Indexed as

Candidate geneEgg productionGenome-wide association studyMeat-type chickenSelective sweep analysis

Identifiers

PMID35941697
PMCPMC9361671
OpenAlexW4295705301

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.