Evidence map›Paper›PMID 35941271›Full record

ArticleVirus genes2022

Characterization of the first Rubus yellow net virus genome from blackberry.

Mišaela Vakić, Daisy Stainton, Duška Delić, Ioannis E Tzanetakis

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.6field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Mišaela Vakić *Faculty of Agriculture, University of Banja Luka, Banja Luka, Bosnia and Herzegovina.
Daisy Stainton *Department of Entomology and Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR, 72701, USA.
Duška Delić *Faculty of Agriculture, University of Banja Luka, Banja Luka, Bosnia and Herzegovina.
Ioannis E TzanetakisDepartment of Entomology and Plant Pathology, Division of Agriculture, University of Arkansas System, Fayetteville, AR, 72701, USA. itzaneta@uark.edu.
University of Arkansas System · USUniversity of Banja Luka · BA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rubus yellow net virus (RYNV) is a badnavirus that infects Rubus spp. Mixed infections with black raspberry necrosis virus and raspberry leaf mottle virus cause raspberry mosaic, a disease that leads to significant losses and even plant death. RYNV has been reported in several European countries and the Americas yet there is substantial lack of knowledge, especially when it comes to virus diversity and the evolutionary forces that affect virus fitness outside its primary host, raspberry. Herein, we report the first RYNV episomal genome isolated from blackberry and this is the first report of the virus in Bosnia and Herzegovina. The isolate has five open reading frames (ORFs) and, when compared with other fully sequenced counterparts, showed 82-97% nucleotide pairwise identity. This communication adds to our limited knowledge on RYNV and addresses some of the gaps in RYNV genetics when it comes to the coding capacity of episomal isolates and the probability of the first fully sequenced isolate of the virus being integrated in the raspberry genome.

Indexed as

BadnavirusRubusGenome, ViralOpen Reading FramesPlant DiseasesBadnavirusEpisomalEvolutionary analysisRubus fruticosus L

Identifiers

PMID35941271
OpenAlexW4292283990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.