Evidence map›Paper›PMID 35938870›Full record

ArticleJournal of virology2022

Altered Immunoglobulin Repertoire and Decreased IgA Somatic Hypermutation in the Gut during Chronic HIV-1 Infection.

Sean T Jones, Kejun Guo, Emily H Cooper, Stephanie M Dillon, Cheyret Wood, David H Nguyen, Guannan Shen, Bradley S Barrett, Daniel N Frank, Miranda Kroehl and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Mucosal immunity in acute HIV: a review of recent work.Current opinion in HIV and AIDS · 2025
    Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Sean T JonesDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Kejun GuoDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Emily H CooperCenter for Innovative Design and Analysis, Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Stephanie M DillonDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Cheyret WoodCenter for Innovative Design and Analysis, Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
David H NguyenDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Guannan ShenCenter for Innovative Design and Analysis, Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Bradley S BarrettDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Daniel N FrankDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Miranda KroehlCenter for Innovative Design and Analysis, Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Edward N JanoffDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Katerina KechrisCenter for Innovative Design and Analysis, Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Cara C WilsonDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.
Mario L SantiagoDivision of Infectious Diseases, Department of Medicine, University of Colorado Anschutz Medical Campusgrid.430503.1, Aurora, Colorado, USA.ORCID 0000-0001-7792-2706
University of Colorado Anschutz Medical Campus · US

Funding

TRAINING PROGRAM IN IMMUNOLOGYT32AI007405 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Laurel L Lenz, Raul Martin Torres · 1991 to 2026
$10.5M
Innate Restriction Factor Modulation of Retrovirus-specific Humoral ImmunityR01AI090795 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS · 2010 to 2013
$2.8M
Role of Type I IFNs in Mucosal HIV-1 Immunity and PathogenesisR01AI134220 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS, WILSON, CARA C. · 2017 to 2021
$2.7M
APOBEC3/Rfv3 and Immunoglobulin Somatic HypermutationR01AI116603 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS · 2016 to 2020
$2.5M
Mechanisms of Impaired HIV-associated B cell and Pneumococcal Vaccine responsesR01AI108479 · NIAID · UNIVERSITY OF COLORADO DENVER · PI JANOFF, EDWARD N · 2014 to 2018
$2.3M
Mechanisms of HIV-associated Disruption of Intestinal HomeostasisR01DK088663 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI WILSON, CARA C. · 2010 to 2013
$1.6M
The Public Mucosal Antibody Repertoire in HIV-1 InfectionR21AI183981 · NIAID · UNIVERSITY OF COLORADO DENVER · PI SANTIAGO, MARIO LUIS, WILSON, CARA C. · 2024 to 2025
$406k
Impact of HIV-1 and Aging on Mucosal Vaccine ResponsesI01CX001464 · VA · VA EASTERN COLORADO HEALTH CARE SYSTEM · PI JANOFF, EDWARD N · 2017 to 2021
–
CSRD VA I01 CX001464NIAID NIH HHS R01 AI090795NIAID NIH HHS R01 AI108479NIAID NIH HHS R01 AI116603NIAID NIH HHS R01 AI134220NIAID NIH HHS R21 AI183981NIAID NIH HHS T32 AI007405NIDDK NIH HHS R01 DK088663
6 · The paper itself

Abstract

Humoral immune perturbations contribute to pathogenic outcomes in persons with HIV-1 infection (PWH). Gut barrier dysfunction in PWH is associated with microbial translocation and alterations in microbial communities (dysbiosis), and IgA, the most abundant immunoglobulin (Ig) isotype in the gut, is involved in gut homeostasis by interacting with the microbiome. We determined the impact of HIV-1 infection on the antibody repertoire in the gastrointestinal tract by comparing Ig gene utilization and somatic hypermutation (SHM) in colon biopsies from PWH (

Indexed as

Gastrointestinal TractHIV InfectionsImmunoglobulin ASomatic Hypermutation, ImmunoglobulinDysbiosisHIV-1HumansImmunity, HumoralImmunoglobulin Agut microbiomeHIV-1IgAmucosal immunitysomatic hypermutation

Identifiers

PMID35938870
PMCPMC9472609
OpenAlexW4290723764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.