Evidence map›Paper›PMID 35937186›Full record

ReviewNeurophotonics2022

Review of data processing of functional optical microscopy for neuroscience.

Hadas Benisty, Alexander Song, Gal Mishne, Adam S Charles

Abstract readReview
In one paragraph

Review in Neurophotonics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Deriving functional network topology frombioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. NeuroConv: Streamlining Neurophysiology Data Conversion to the NWB Standard.Proceedings of the Python in Science Conferences. Python in Science Conference · 2025
    Article
  6. Article
  7. Article
  8. Two-photon calcium imaging of neuronal activity.Nature reviews. Methods primers · 2022
    Article
  9. GraFT: Graph Filtered Temporal Dictionary Learning for Functional Neural Imaging.IEEE transactions on image processing : a publication of the IEEE Signal Processing Society · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hadas BenistyYale Neuroscience, New Haven, Connecticut, United States.ORCID https://orcid.org/0000-0001-6308-2267
Alexander SongMax Planck Institute for Intelligent Systems, Stuttgart, Germany.
Gal MishneUC San Diego, Halıcığlu Data Science Institute, Department of Electrical and Computer Engineering and the Neurosciences Graduate Program, La Jolla, California, United States.ORCID https://orcid.org/0000-0002-5287-3626
Adam S CharlesJohns Hopkins University, Kavli Neuroscience Discovery Institute, Center for Imaging Science, Department of Biomedical Engineering, Department of Neuroscience, and Mathematical Institute for Data Science, Baltimore, Maryland, United States.ORCID https://orcid.org/0000-0002-9045-3489

Funding

Project 4U19NS123717 · NINDS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI LINNINGER, ANDREAS A · 2021 to 2025
$13.4M
UCSD Leading the Advancement of Underrepresented Neuroscientists for Change (LAUNCH) Faculty Development ProgramR25NS117367 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Victoria B Risbrough, Joann Trejo · 2020 to 2026
$1.6M
Data-driven analysis for neuronal dynamic modelingR01EB026936 · NIBIB · YALE UNIVERSITY · PI MISHNE, GAL · 2018 to 2020
$1.1M
NIBIB NIH HHS R01 EB026936NINDS NIH HHS R25 NS117367NINDS NIH HHS U19 NS123717
6 · The paper itself

Abstract

Functional optical imaging in neuroscience is rapidly growing with the development of optical systems and fluorescence indicators. To realize the potential of these massive spatiotemporal datasets for relating neuronal activity to behavior and stimuli and uncovering local circuits in the brain, accurate automated processing is increasingly essential. We cover recent computational developments in the full data processing pipeline of functional optical microscopy for neuroscience data and discuss ongoing and emerging challenges.

Indexed as

calcium imagingdata analysisfluorescence microscopyfunctional imaging

Identifiers

PMID35937186
PMCPMC9351186

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.