Evidence map›Paper›PMID 35934844›Full record

ArticleFEBS open bio2022

ERCC5, HES6 and RORA are potential diagnostic markers of coronary artery disease.

Zhifeng Bai, Yuanyuan Luo, Linyun Tian

Abstract read
In one paragraph

Article in FEBS open bio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Zhifeng BaiSecond Department of Cardiovascular Medicine, The First People's Hospital of Shangqiu, Shangqiu City, China.ORCID 0000-0002-8479-2310
Yuanyuan LuoDepartment of Endocrinology and Metabolism, The First Affiliated Hospital of Zhengzhou University, Zhengzhou University, Zhengzhou, China.
Linyun TianDepartment of Cardiology, The First People's Hospital of Yunnan Province, The Affiliated Hospital of Kunming University of Science and Technology, Kunming, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mortality rate of patients with coronary artery disease (CAD) increases year by year, and the age of onset is decreasing, primarily because of the lack of an efficient and convenient diagnostic method for CAD. In the present study, we aimed to detect CAD-correlated biomarkers and the regulatory pathways involved through weighted co-expression network analysis. The microarray data originated from 93 CAD patients and 48 controls within the Gene Expression Omnibus (GEO) database. The gene network was implemented by weighted gene co-expression network analysis, and the genes were observed to fall into a range of modules. We took the intersection of genes in the modules most correlated with CAD with the differentially expressed genes of CAD, which were identified by applying the limma package. Lasso regression and support vector machine recursive feature elimination algorithms were used to determine CAD candidate signature genes. The biomarkers for diagnosing CAD were detected by validating candidate signature gene diagnostic capabilities (receiver operating characteristic curves) based on data sets from GEO. Three modules were selected, and 26 vital genes were identified. Eight of these genes were reported as the optimal candidate features in terms of CAD diagnosis. Through receiver operating characteristic curve analysis, we identified three genes (ERCC5, HES6 and RORA; area under the curve > 0.8) capable of distinguishing CAD from the control, and observed that these genes are correlated with the immune response. In summary, ERCC5, HES6 and RORA may have potential for diagnosis of CAD.

Indexed as

Coronary Artery DiseaseBasic Helix-Loop-Helix ProteinsBiomarkersDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5EndonucleasesGene Expression ProfilingGene Regulatory NetworksHumansNuclear ProteinsNuclear Receptor Subfamily 1, Group F, Member 1Repressor ProteinsSupport Vector MachineTranscription FactorsBasic Helix-Loop-Helix ProteinsBiomarkersDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5EndonucleasesHES6 protein, humanNuclear ProteinsNuclear Receptor Subfamily 1, Group F, Member 1Repressor ProteinsRORA protein, humanTranscription Factorsbioinformaticscoronary heart diseasediagnostic markerERCC5HES6RORA

Identifiers

PMID35934844
PMCPMC9527589

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.