Evidence map›Paper›PMID 35934477›Full record

ArticleMethods in enzymology2022

CMG helicase activity on G4-containing DNA templates.

Sahil Batra, Sujan Devbhandari, Dirk Remus

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sahil BatraMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States.
Sujan DevbhandariMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States.
Dirk RemusMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States. Electronic address: remusd@mskcc.org.
Memorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Mechanism of DNA replication initiation in Saccharomyces cerevisiaeR01GM107239 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI REMUS, DIRK · 2014 to 2023
$3.9M
Molecular mechanisms of replication-coupled chromatin assemblyR01GM127428 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI REMUS, DIRK · 2019 to 2022
$2.0M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM107239NIGMS NIH HHS R01 GM127428
6 · The paper itself

Abstract

G-quadruplexes (G4s) are non-canonical nucleic acid structures that form in G-rich regions of the genome and threaten genome stability by interfering with DNA replication. However, the underlying mechanisms are poorly understood. We have recently found that G4s can stall eukaryotic replication forks by blocking the progression of replicative DNA helicase, CMG. In this paper, we detail the methodology of DNA unwinding assays to investigate the impact of G4s on CMG progression. The method details the purification of recombinantly expressed CMG from the budding yeast, Saccharomyces cerevisiae, purification of synthetic oligonucleotides, and covers various aspects of DNA substrate preparation, reaction setup and result interpretation. The use of synthetic oligonucleotides provides the advantage of allowing to control the formation of G4 structures in DNA substrates. The methods discussed here can be adapted for the study of other DNA helicases and provide a general template for the assembly of DNA substrates with distinct G4 structures.

Indexed as

G-QuadruplexesDNADNA HelicasesDNA ReplicationOligonucleotidesSaccharomyces cerevisiaeDNADNA HelicasesOligonucleotidesCMGDNA helicaseDNA replicationDNA unwindingG-quadruplex

Identifiers

PMID35934477
PMCPMC9578012
OpenAlexW4221025624

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.