Evidence map›Paper›PMID 35931864›Full record

ArticleNature genetics2022

Genetics of the human microglia regulome refines Alzheimer's disease risk loci.

Roman Kosoy, John F Fullard, Biao Zeng, Jaroslav Bendl, Pengfei Dong, Samir Rahman, Steven P Kleopoulos, Zhiping Shao, Kiran Girdhar, Jack Humphrey and 9 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed, 3 pooled it
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed, 3 syntheses or guidelines pooled it, 162 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Targeting Microglial Transcriptional Reprogramming as a Therapy Strategy for Alzheimer's Disease.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
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  20. APOE*4 risk-modifying genes and drug targets in Alzheimer's disease through cell-type-specific genomic analyses.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Roman Kosoy *Center for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA. roman.kosoy@mssm.edu.
John F Fullard *Center for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0001-9874-2907
Biao Zeng *Center for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.
Jaroslav Bendl *Center for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0001-9989-2720
Pengfei DongCenter for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0003-3735-5158
Samir RahmanCenter for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.
Steven P KleopoulosCenter for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.
Zhiping ShaoCenter for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.
Kiran GirdharCenter for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0002-5622-042X
Jack HumphreyDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York, USA.
Katia de Paiva LopesDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0002-0240-0126
Alexander W CharneyDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0001-8135-6858
Brian H KopellDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, USA.
Towfique RajDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0002-9355-5704
David BennettRush Alzheimer's Disease Center, Rush University Medical Center, Chicago, Illinois, USA.
Christopher P KellnerDepartment of Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, USA.
Vahram HaroutunianDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID http://orcid.org/0000-0001-5860-2512
Gabriel E HoffmanCenter for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA. gabriel.hoffman@mssm.edu.ORCID http://orcid.org/0000-0002-0957-0224
Panos RoussosCenter for Disease Neurogenomics, Icahn School of Medicine at Mount Sinai, New York, USA. panagiotis.roussos@mssm.edu.ORCID http://orcid.org/0000-0002-4640-6239
Allen Institute for Brain Science · USIcahn School of Medicine at Mount Sinai · USRush University Medical Center · USJames J. Peters VA Medical Center · USNathan Kline Institute for Psychiatric Research · US

Funding

SUPPLEMENT TO RUSH ALZHEIMERS DISEASE CENTER COREP30AG010161 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI BENNETT, DAVID ALAN · 1991 to 2020
$49.1M
EPIDEMIOLOGY OF NEURAL RESERVE AND NEUROBIOLOGY IN AGINGR01AG017917 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI BENNETT, DAVID ALAN · 2001 to 2023
$43.3M
Research Education ComponentP30AG066514 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI NIKOLAOS K ROBAKIS · 2020 to 2026
$31.0M
Rush Alzheimer's Disease Research CenterP30AG072975 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI Lisa L Barnes, Julie A. Schneider · 2021 to 2026
$24.7M
RISK FACTORS, PATHOLOGY, AND CLINICAL EXPRESSIONS OF ADR01AG015819 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI BENNETT, DAVID ALAN · 1998 to 2024
$21.4M
Understanding the molecular mechanisms that contribute to neuropsychiatric symptoms in Alzheimer DiseaseR01AG067025 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FINKBEINER, STEVEN M, HAROUTUNIAN, VAHRAM · 2019 to 2023
$11.8M
Higher Order Chromatin and Genetic Risk for Alzheimer's DiseaseR01AG050986 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ROUSSOS, PANAGIOTIS · 2015 to 2025
$11.2M
Understanding the protective and neuroinflammatory role of human brain immune cells in Alzheimer DiseaseR01AG065582 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HAROUTUNIAN, VAHRAM, ROUSSOS, PANAGIOTIS · 2020 to 2024
$9.9M
Exploring the Role of the Brain Epigenome: Cognitive Decline and Life ExperiencesRF1AG036042 · NIA · RUSH UNIVERSITY MEDICAL CENTER · PI BENNETT, DAVID ALAN, DE JAGER, PHILIP L · 2016 to 2016
$5.5M
The role of peripheral myeloid cells in Alzheimers diseaseR01AG054005 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI RAJ, TOWFIQUE · 2017 to 2021
$4.1M
A multiscale investigation of the living human brainR01AG069976 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHARNEY, ALEXANDER W · 2020 to 2024
$3.1M
COVID and Translational Science supercomputer (CATS)S10OD030463 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2021 to 2021
$2.0M
NIA NIH HHS P30 AG010161NIA NIH HHS P30 AG066514NIA NIH HHS P30 AG072975NIA NIH HHS R01 AG015819NIA NIH HHS R01 AG017917NIA NIH HHS R01 AG050986NIA NIH HHS R01 AG054005NIA NIH HHS R01 AG065582NIA NIH HHS R01 AG065926NIA NIH HHS R01 AG067025NIA NIH HHS R01 AG069976NIA NIH HHS RF1 AG036042NIH HHS S10 OD026880NIH HHS S10 OD030463
6 · The paper itself

Abstract

Microglia are brain myeloid cells that play a critical role in neuroimmunity and the etiology of Alzheimer's disease (AD), yet our understanding of how the genetic regulatory landscape controls microglial function and contributes to AD is limited. Here, we performed transcriptome and chromatin accessibility profiling in primary human microglia from 150 donors to identify genetically driven variation and cell-specific enhancer-promoter (E-P) interactions. Integrative fine-mapping analysis identified putative regulatory mechanisms for 21 AD risk loci, of which 18 were refined to a single gene, including 3 new candidate risk genes (KCNN4, FIBP and LRRC25). Transcription factor regulatory networks captured AD risk variation and identified SPI1 as a key putative regulator of microglia expression and AD risk. This comprehensive resource capturing variation in the human microglia regulome provides insights into the etiology of neurodegenerative disease.

Indexed as

Alzheimer DiseaseNeurodegenerative DiseasesBrainCarrier ProteinsHumansMembrane ProteinsMicrogliaTranscriptomeCarrier ProteinsFIBP protein, humanMembrane Proteins

Identifiers

PMID35931864
PMCPMC9388367
OpenAlexW4295079251

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.