Evidence map›Paper›PMID 35931681›Full record

ArticleNature communications2022

Recursive Editing improves homology-directed repair through retargeting of undesired outcomes.

Lukas Möller, Eric J Aird, Markus S Schröder, Lena Kobel, Lucas Kissling, Lilly van de Venn, Jacob E Corn

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  6. Review
  7. Enrichment strategies to enhance genome editing.Journal of biomedical science · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lukas MöllerInstitute of Molecular Health Sciences, Department of Biology, ETH Zurich, Zurich, Switzerland.ORCID 0000-0002-4375-8837
Eric J AirdInstitute of Molecular Health Sciences, Department of Biology, ETH Zurich, Zurich, Switzerland. eric.aird@biol.ethz.ch.ORCID 0000-0002-4873-042X
Markus S SchröderInstitute of Molecular Health Sciences, Department of Biology, ETH Zurich, Zurich, Switzerland.ORCID 0000-0001-5942-1254
Lena KobelInstitute of Molecular Health Sciences, Department of Biology, ETH Zurich, Zurich, Switzerland.ORCID 0000-0001-7949-141X
Lucas KisslingInstitute of Molecular Health Sciences, Department of Biology, ETH Zurich, Zurich, Switzerland.
Lilly van de VennInstitute of Molecular Health Sciences, Department of Biology, ETH Zurich, Zurich, Switzerland.ORCID 0000-0003-0158-1225
Jacob E CornInstitute of Molecular Health Sciences, Department of Biology, ETH Zurich, Zurich, Switzerland. jacob.corn@biol.ethz.ch.ORCID 0000-0002-7798-5309
ETH Zurich · CHUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas induced homology-directed repair (HDR) enables the installation of a broad range of precise genomic modifications from an exogenous donor template. However, applications of HDR in human cells are often hampered by poor efficiency, stemming from a preference for error-prone end joining pathways that yield short insertions and deletions. Here, we describe Recursive Editing, an HDR improvement strategy that selectively retargets undesired indel outcomes to create additional opportunities to produce the desired HDR allele. We introduce a software tool, named REtarget, that enables the rational design of Recursive Editing experiments. Using REtarget-designed guide RNAs in single editing reactions, Recursive Editing can simultaneously boost HDR efficiencies and reduce undesired indels. We also harness REtarget to generate databases for particularly effective Recursive Editing sites across the genome, to endogenously tag proteins, and to target pathogenic mutations. Recursive Editing constitutes an easy-to-use approach without potentially deleterious cell manipulations and little added experimental burden.

Indexed as

CRISPR-Cas SystemsGene EditingDNA Breaks, Double-StrandedDNA End-Joining RepairHumansRecombinational DNA RepairRNA, Guide, CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID35931681
PMCPMC9356142
OpenAlexW4289890711

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.