Evidence map›Paper›PMID 35930610›Full record

ArticlePLoS pathogens2022

The TPR domain of PgaA is a multifunctional scaffold that binds PNAG and modulates PgaB-dependent polymer processing.

Roland Pfoh, Adithya S Subramanian, Jingjing Huang, Dustin J Little, Adam Forman, Benjamin R DiFrancesco, Negar Balouchestani-Asli, Elena N Kitova, John S Klassen, Régis Pomès and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Roland PfohProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.
Adithya S SubramanianProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.
Jingjing HuangProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.
Dustin J LittleProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.
Adam FormanDepartment of Chemistry, University of Toronto, Toronto, Ontario, Canada.
Benjamin R DiFrancescoDepartment of Chemistry, University of Toronto, Toronto, Ontario, Canada.
Negar Balouchestani-AsliProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.
Elena N KitovaDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
John S KlassenDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.
Régis PomèsProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.
Mark NitzDepartment of Chemistry, University of Toronto, Toronto, Ontario, Canada.
P Lynne HowellProgram in Molecular Medicine, The Hospital for Sick Children, Toronto, Ontario, Canada.ORCID 0000-0002-2776-062X
University of Toronto · CAHospital for Sick Children · CAUniversity of Alberta · CA

Funding

CIHR FDN154327CIHR MOP 43998
6 · The paper itself

Abstract

The synthesis of exopolysaccharides as biofilm matrix components by pathogens is a crucial factor for chronic infections and antibiotic resistance. Many periplasmic proteins involved in polymer processing and secretion in Gram-negative synthase dependent exopolysaccharide biosynthetic systems have been individually characterized. The operons responsible for the production of PNAG, alginate, cellulose and the Pel polysaccharide each contain a gene that encodes an outer membrane associated tetratricopeptide repeat (TPR) domain containing protein. While the TPR domain has been shown to bind other periplasmic proteins, the functional consequences of these interactions for the polymer remain poorly understood. Herein, we show that the C-terminal TPR region of PgaA interacts with the de-N-acetylase domain of PgaB, and increases its deacetylase activity. Additionally, we found that when the two proteins form a complex, the glycoside hydrolase activity of PgaB is also increased. To better understand structure-function relationships we determined the crystal structure of a stable TPR module, which has a conserved groove formed by three repeat motifs. Tryptophan quenching, mass spectrometry analysis and molecular dynamics simulation studies suggest that the crystallized TPR module can bind PNAG/dPNAG via its electronegative groove on the concave surface, and potentially guide the polymer through the periplasm towards the porin for export. Our results suggest a scaffolding role for the TPR domain that combines PNAG/dPNAG translocation with the modulation of its chemical structure by PgaB.

Indexed as

Periplasmic ProteinsTetratricopeptide RepeatAmidohydrolasesBiofilmsPolymersAmidohydrolasesPeriplasmic ProteinsPolymers

Identifiers

PMID35930610
PMCPMC9384988
OpenAlexW4289973436

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.