Evidence map›Paper›PMID 35929795›Full record

ArticleG3 (Bethesda, Md.)2022

The genome sequence of the scarce swallowtail, Iphiclides podalirius.

Alexander Mackintosh, Dominik R Laetsch, Tobias Baril, Sam Ebdon, Paul Jay, Roger Vila, Alex Hayward, Konrad Lohse

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alexander MackintoshInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh EH9 3FL, UK.
Dominik R LaetschInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh EH9 3FL, UK.ORCID 0000-0001-7887-0186
Tobias BarilCentre for Ecology and Conservation, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK.ORCID 0000-0002-5936-7531
Sam EbdonInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh EH9 3FL, UK.ORCID 0000-0002-9321-4686
Paul JayEcologie Systématique Evolution, Bâtiment 360, CNRS, AgroParisTech, Université Paris-Saclay, 91400 Orsay, France.ORCID 0000-0001-5979-1263
Roger VilaInstitut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona 08003, Spain.ORCID 0000-0002-2447-4388
Alex HaywardCentre for Ecology and Conservation, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK.ORCID 0000-0001-7413-718X
Konrad LohseInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh EH9 3FL, UK.ORCID 0000-0001-9918-058X

Funding

Biotechnology and Biological Sciences Research Council BB/N020146/1
6 · The paper itself

Abstract

The scarce swallowtail, Iphiclides podalirius (Linnaeus, 1758), is a species of butterfly in the family Papilionidae. Here, we present a chromosome-level genome assembly for Iphiclides podalirius as well as gene and transposable element annotations. We investigate how the density of genomic features differs between the 30 Iphiclides podalirius chromosomes. We find that shorter chromosomes have higher heterozygosity at four-fold-degenerate sites and a greater density of transposable elements. While the first result is an expected consequence of differences in recombination rate, the second suggests a counter-intuitive relationship between recombination and transposable element evolution. This high-quality genome assembly, the first for any species in the tribe Leptocircini, will be a valuable resource for population genomics in the genus Iphiclides and comparative genomics more generally.

Indexed as

ButterfliesAnimalsDNA Transposable ElementsGenomicsMolecular Sequence AnnotationDNA Transposable Elementschromosome lengthgenome annotationgenome assemblyheterozygosityIphiclides podalirius

Identifiers

PMID35929795
PMCPMC9434224

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.