Evidence map›Paper›PMID 35929764›Full record

ArticlePharmacology research & perspectives2022

Characterization of TR-107, a novel chemical activator of the human mitochondrial protease ClpP.

Emily M J Fennell, Lucas J Aponte-Collazo, Joshua D Wynn, Kristina Drizyte-Miller, Elisa Leung, Yoshimi Endo Greer, Paul R Graves, Andrew A Iwanowicz, Hani Ashamalla, Ekhson Holmuhamedov and 7 more

Open access · goldAbstract read
In one paragraph

Article in Pharmacology research & perspectives, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  4. Molecular mechanisms of mitochondrial AAA+ proteases.The Journal of biological chemistry · 2026
    Review
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  7. Article
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  10. Mitochondrial Protease ClpP: Cancer Marker and Drug Target.Pharmaceuticals (Basel, Switzerland) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Emily M J FennellDepartment of Pharmacology and the Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Lucas J Aponte-CollazoDepartment of Pharmacology and the Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Joshua D WynnDepartment of Pharmacology and the Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Kristina Drizyte-MillerDepartment of Pharmacology and the Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Elisa LeungDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.
Yoshimi Endo GreerWomen's Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Paul R GravesDepartment of Radiation Oncology, New York Presbyterian Brooklyn Methodist Hospital, Brooklyn, New York, USA.
Andrew A IwanowiczMadera Therapeutics LLC, Chapel Hill, North Carolina, USA.
Hani AshamallaDepartment of Radiation Oncology, New York Presbyterian Brooklyn Methodist Hospital, Brooklyn, New York, USA.
Ekhson HolmuhamedovInstitute of Theoretical and Experimental Biophysics, Russian Academy of Sciences, Pushchino, Russian Federation.
Henk LangMadera Therapeutics LLC, Chapel Hill, North Carolina, USA.
Donald S KaranewskyMadera Therapeutics LLC, Chapel Hill, North Carolina, USA.
Channing J DerDepartment of Pharmacology and the Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Walid A HouryDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.
Stanley LipkowitzWomen's Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Edwin J IwanowiczMadera Therapeutics LLC, Chapel Hill, North Carolina, USA.
Lee M GravesDepartment of Pharmacology and the Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.ORCID 0000-0002-4736-9855
University of North Carolina at Chapel Hill · USMadera BioSciences (United States) · USNational Institutes of Health · USNewYork–Presbyterian Brooklyn Methodist Hospital · USUniversity of Toronto · CAInstitute of Theoretical and Experimental Biophysics · RU

Funding

Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
TRAIL-induced Cell Death in Breast Cancer CellsZIASC007263 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI LIPKOWITZ, STANLEY · 2009 to 2025
$11.8M
Targeting undruggable RAS for cancer treatmentR35CA232113 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 2018 to 2024
$6.3M
Elucidating the mechanism of action of novel ClpP activators in activation of the mitochondrial unfolded protein response.R01GM138520 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRAVES, LEE M · 2020 to 2023
$1.3M
Intramural NIH HHS ZIA SC007263NCI NIH HHS R35 CA232113NCI NIH HHS T32 CA009156NIGMS NIH HHS R01 GM138520NIH HHS 5R01GM138520-02NIH HHS R35CA232113NIH HHS T32CA009156
6 · The paper itself

Abstract

We recently described the identification of a new class of small-molecule activators of the mitochondrial protease ClpP. These compounds synthesized by Madera Therapeutics showed increased potency of cancer growth inhibition over the related compound ONC201. In this study, we describe chemical optimization and characterization of the next generation of highly potent and selective small-molecule ClpP activators (TR compounds) and demonstrate their efficacy against breast cancer models in vitro and in vivo. We selected one compound (TR-107) with excellent potency, specificity, and drug-like properties for further evaluation. TR-107 showed ClpP-dependent growth inhibition in the low nanomolar range that was equipotent to paclitaxel in triple-negative breast cancer (TNBC) cell models. TR-107 also reduced specific mitochondrial proteins, including OXPHOS and TCA cycle components, in a time-, dose-, and ClpP-dependent manner. Seahorse XF analysis and glucose deprivation experiments confirmed the inactivation of OXPHOS and increased dependence on glycolysis following TR-107 exposure. The pharmacokinetic properties of TR-107 were compared with other known ClpP activators including ONC201 and ONC212. TR-107 displayed excellent exposure and serum t

Indexed as

Triple Negative Breast NeoplasmsAnimalsEndopeptidase ClpHumansMiceMitochondriaMitochondrial ProteinsPeptide HydrolasesClpP protein, humanEndopeptidase ClpMitochondrial ProteinsPeptide Hydrolasesagonistcell proliferationmitochondriaoxidative phosphorylationproteasesmall moleculetriple-negative breast cancer

Identifiers

PMID35929764
PMCPMC9354705
OpenAlexW4289885426

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.