Evidence map›Paper›PMID 35924616›Full record

ArticleThe Onderstepoort journal of veterinary research2022

Species identification and cow risks of non-aureus staphylococci from South African dairy herds.

Inge-Marie Petzer, Christiaan Labuschagne, Lufuno Phophi, Joanne Karzis

Open access · goldAbstract read
In one paragraph

Article in The Onderstepoort journal of veterinary research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Inge-Marie PetzerDepartment of Production Animal Studies, Faculty of Veterinary Science, University of Pretoria, Pretoria. ingemarie.petzer@gmail.com.
Christiaan Labuschagne
Lufuno Phophi
Joanne Karzis
University of Pretoria · ZAInqaba Biotechnical Industries

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Detailed information on specific species of non-aureus staphylococci (NAS) has become a necessity for effective udder health control programs in South Africa. The main objective of this preliminary study was to identify the different NAS species and strains present in dairy herds in South Africa using a cost-effective method. A further objective was to investigate the effects of cow risk factors and farming systems on the NAS isolates identified. A total of 214 NAS, isolated from milk collected from 17 South African dairy herds, were identified using three diagnostic tests (API Staph test, MALDI-TOF and 16s rRNA). There was a good observed agreement between the MALDI-TOF and 16S rRNA sequencing (92.2%) and a poor observed agreement between the MALDI-TOF and API Staph (25.7%). The genetic relatedness within species was investigated in 128 of these isolates using random polymorphic amplified deoxyribonucleic acid (DNA) (RAPD), verified by multilocus sequence typing (MLST), and phylogenetic analysis and cow risk factors were investigated on species level. The main NAS species isolated were Staphylococcus chromogenes (75.2%), Staphylococcus epidermidis (9.4%) and Staphylococcus haemolyticus (8.9%). The RAPD test identified 34 Staphylococcus chromogenes, 13 Staphylococcus epidermidis and nine Staphylococcus haemolyticus strains, indicating genetic diversity amongst strains and herds. The presence of NAS intramammary infections was found to be significantly related to the farming systems, composite cow milk somatic cell count (SCC), parity and days in milk (DIM). Significantly more NAS were isolated from primiparous and from older cows. This knowledge could assist with the management of NAS on dairy farms.

Indexed as

Cattle DiseasesMastitis, BovineStaphylococcal InfectionsAnimalsCattleFemaleMilkMultilocus Sequence TypingPhylogenyPregnancyRandom Amplified Polymorphic DNA TechniqueRNA, Ribosomal, 16SSouth AfricaStaphylococcusRNA, Ribosomal, 16Scow risk factorsdairy cowsgenetic diversityintramammary infectionmolecular epidemiologyNAS species identificationSouth Africa

Identifiers

PMID35924616
PMCPMC9350540
OpenAlexW4289348986

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.