Evidence map›Paper›PMID 35921131›Full record

ArticleeLife2022

Robust and Efficient Assessment of Potency (REAP) as a quantitative tool for dose-response curve estimation.

Shouhao Zhou, Xinyi Liu, Xinying Fang, Vernon M Chinchilli, Michael Wang, Hong-Gang Wang, Nikolay V Dokholyan, Chan Shen, J Jack Lee

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Shouhao Zhou *Department of Public Health Sciences, Pennsylvania State University, Hershey, United States.ORCID 0000-0002-8124-5047
Xinyi Liu *Department of Public Health Sciences, Pennsylvania State University, Hershey, United States.
Xinying Fang *Department of Public Health Sciences, Pennsylvania State University, Hershey, United States.ORCID 0000-0001-9121-5717
Vernon M ChinchilliDepartment of Public Health Sciences, Pennsylvania State University, Hershey, United States.
Michael WangDepartment of Lymphoma and Myeloma, University of Texas MD Anderson Cancer Center, Houston, United States.
Hong-Gang WangDepartment of Pharmacology, Pennsylvania State University, Hershey, United States.
Nikolay V DokholyanDepartment of Pharmacology, Pennsylvania State University, Hershey, United States.ORCID 0000-0002-8225-4025
Chan ShenDepartment of Public Health Sciences, Pennsylvania State University, Hershey, United States.
J Jack LeeDepartment of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, United States.
Pennsylvania State University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Nanoscale programming of cellular and physiological phenotypes: EquipmentR35GM134864 · NIGMS · UNIVERSITY OF VIRGINIA · PI Nikolay Dokholyan · 2020 to 2026
$5.2M
NCI NIH HHS P30 CA016672NIGMS NIH HHS R35 GM134864
6 · The paper itself

Abstract

The median-effect equation has been widely used to describe the dose-response relationship and identify compounds that activate or inhibit specific disease targets in contemporary drug discovery. However, the experimental data often contain extreme responses, which may significantly impair the estimation accuracy and impede valid quantitative assessment in the standard estimation procedure. To improve the quantitative estimation of the dose-response relationship, we introduce a novel approach based on robust beta regression. Substantive simulation studies under various scenarios demonstrate solid evidence that the proposed approach consistently provides robust estimation for the median-effect equation, particularly when there are extreme outcome observations. Moreover, simulation studies illustrate that the proposed approach also provides a narrower confidence interval, suggesting a higher power in statistical testing. Finally, to efficiently and conveniently perform common lab data analyses, we develop a freely accessible web-based analytic tool to facilitate the quantitative implementation of the proposed approach for the scientific community.

Indexed as

Computer Simulationcancer biologydose-responsedrug potencynonequantitative toolrobust estimationShinysoftware

Identifiers

PMID35921131
PMCPMC9348845
OpenAlexW4289550213

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.