Evidence map›Paper›PMID 35920121›Full record

ArticleJournal of veterinary science2022

Epidemiological investigation and phylogenetic analysis of Classical Swine Fever virus in Yunnan province from 2015 to 2021.

Jun Yao, Linlin Su, Qiaoping Wang, Lin Gao, Jiarui Xie, Yuwen He, Xianghua Shu, Chunlian Song, Jun Chai, Yifang Zhang and 1 more

Abstract read
In one paragraph

Article in Journal of veterinary science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jun Yao *Yunnan Tropical and Subtropical Animal Virus Diseases Laboratory, Yunnan Animal Science & Veterinary Institute, Kunming 650224, China.ORCID https://orcid.org/0000-0002-8553-4540
Linlin Su *College of Animal Medicine, Yunnan Agricultural University, Kunming 650201, China.ORCID https://orcid.org/0000-0002-5559-1042
Qiaoping WangCollege of Animal Medicine, Yunnan Agricultural University, Kunming 650201, China.ORCID https://orcid.org/0000-0002-8432-3581
Lin GaoYunnan Tropical and Subtropical Animal Virus Diseases Laboratory, Yunnan Animal Science & Veterinary Institute, Kunming 650224, China.ORCID https://orcid.org/0000-0002-9341-2957
Jiarui XieYunnan Tropical and Subtropical Animal Virus Diseases Laboratory, Yunnan Animal Science & Veterinary Institute, Kunming 650224, China.ORCID https://orcid.org/0000-0002-6186-4350
Yuwen HeYunnan Tropical and Subtropical Animal Virus Diseases Laboratory, Yunnan Animal Science & Veterinary Institute, Kunming 650224, China.ORCID https://orcid.org/0000-0003-2045-2365
Xianghua ShuCollege of Animal Medicine, Yunnan Agricultural University, Kunming 650201, China.ORCID https://orcid.org/0000-0002-3172-2693
Chunlian SongCollege of Animal Medicine, Yunnan Agricultural University, Kunming 650201, China.ORCID https://orcid.org/0000-0001-5710-9718
Jun ChaiCollege of Animal Medicine, Yunnan Agricultural University, Kunming 650201, China.ORCID https://orcid.org/0000-0003-0240-6621
Yifang ZhangCollege of Animal Medicine, Yunnan Agricultural University, Kunming 650201, China. zyfkmyn@163.com.ORCID https://orcid.org/0000-0001-8034-867X
Shibiao YangYunnan Tropical and Subtropical Animal Virus Diseases Laboratory, Yunnan Animal Science & Veterinary Institute, Kunming 650224, China. yangsb3799@sina.com.ORCID https://orcid.org/0000-0003-0461-941X

Funding

Major Specialized Projects of Yunnan Science and Technology 202102AE090007National Key Research and Development Program of China 2017YFD0501800
6 · The paper itself

Abstract

backgroundClassical swine fever virus (CSFV), the causative agent of classical swine fever (CFS), is a highly contagious disease that poses a serious threat to Chinese pig populations.

objectivesMany provinces of China, such as Shandong, Henan, Hebei, Heilongjiang, and Liaoning provinces, have reported epidemics of CSFV, while the references to the epidemic of CSFV in Yunnan province are rare. This study examined the epidemic characteristics of the CSFV in Yunnan province.

methodsIn this study, 326 tissue samples were collected from different regions in Yunnan province from 2015 to 2021. A reverse transcription-polymerase chain reaction (RT-PCR), sequences analysis, and phylogenetic analysis were performed for the pathogenic detection and analysis of these 326 clinical specimens.

resultsApproximately 3.37% (11/326) of specimens tested positive for the CSFV by RT-PCR, which is lower than that of other regions of China. Sequence analysis of the partial E2 sequences of eleven CSFV strains showed that they shared 89.0-100.0% nucleotide (nt) and 95.0-100.0% amino acid (aa) homology, respectively. Phylogenetic analysis showed that these novel isolates belonged to the subgenotypes 2.1c and 2.1d, with subgenotype 2.1c being predominant.

conclusionsThe CSFV was sporadic in China's Yunnan province from 2015 to 2021. Both 2.1c and 2.1d subgenotypes were found in this region, but 2.1c was dominant.

Indexed as

Classical Swine FeverClassical Swine Fever VirusSwine DiseasesAnimalsChinaGenotypePhylogenySwineClassical swine fever virussequence analysissubgenotype 2.1cYunnan province

Identifiers

PMID35920121
PMCPMC9346530

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.