ArticleBMC genomics2022
Genome‑wide identification, phylogenetic and expression pattern analysis of GATA family genes in foxtail millet (Setaria italica).
Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 35 citations in OpenAlex.
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- Genome-wide identification, evolution, and expression level analysis of the TALE gene family in Sorghum bicolor.BMC plant biology · 2024Article
- Comparative analysis of amino acid sequence level in plant GATA transcription factors.Scientific reports · 2024Article
- Transcriptome and genome-wide analysis of the mango glycosyltransferase family involved in mangiferin biosynthesis.BMC genomics · 2024Article
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- Genome-Wide Identification and Expression Pattern Analysis of GATA Gene Family in Orchidaceae.Genes · 2024Article
- The Putative GATA Transcription FactorLife (Basel, Switzerland) · 2024Article
- Genome-wide characterization and expression analysis of GATA transcription factors under combination of light wavelengths and drought stress in potato.Plant direct · 2024Article
- Genome-wide identification and expression profiling of the ABI5 gene family in foxtail millet (Setaria italica).BMC plant biology · 2024Article
- Genome-Wide Identification and Characterization of the Sweet Orange (International journal of molecular sciences · 2024Article
- Genome-wide identification, structural characterization and gene expression analysis of the WRKY transcription factor family in pea (Pisum sativum L.).BMC plant biology · 2024Article
- Genome-wide identification of GATA transcription factors in tetraploid potato and expression analysis in differently colored potato flesh.Frontiers in plant science · 2024Article
- Genome-wide identification of theFrontiers in plant science · 2024Article
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
Abstract
backgroundTranscription factors (TFs) play important roles in plants. Among the major TFs, GATA plays a crucial role in plant development, growth, and stress responses. However, there have been few studies on the GATA gene family in foxtail millet (Setaria italica). The release of the foxtail millet reference genome presents an opportunity for the genome-wide characterization of these GATA genes.
resultsIn this study, we identified 28 GATA genes in foxtail millet distributed on seven chromosomes. According to the classification method of GATA members in Arabidopsis, SiGATA was divided into four subfamilies, namely subfamilies I, II, III, and IV. Structural analysis of the SiGATA genes showed that subfamily III had more introns than other subfamilies, and a large number of cis-acting elements were abundant in the promoter region of the SiGATA genes. Three tandem duplications and five segmental duplications were found among SiGATA genes. Tissue-specific results showed that the SiGATA genes were mainly expressed in foxtail millet leaves, followed by peels and seeds. Many genes were significantly induced under the eight abiotic stresses, such as SiGATA10, SiGATA16, SiGATA18, and SiGATA25, which deserve further attention.
conclusionsCollectively, these findings will be helpful for further in-depth studies of the biological function of SiGATA, and will provide a reference for the future molecular breeding of foxtail millet.
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