Evidence map›Paper›PMID 35918339›Full record

ArticleScientific data2022

Chromosome-level assembly of Gymnocypris eckloni genome.

Fayan Wang, Lihan Wang, Dan Liu, Qiang Gao, Miaomiao Nie, Shihai Zhu, Yan Chao, Chaojie Yang, Cunfang Zhang, Rigui Yi and 4 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Fayan Wang *State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Lihan Wang *State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Dan LiuState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Qiang GaoState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Miaomiao NieState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Shihai ZhuCollege of Eco-Environmental Engineering, Qinghai University, Xining, 810016, China.
Yan ChaoAnimal Science Department of Agriculture and Animal Husbandry College, Qinghai University, Xining, 810016, China.
Chaojie YangState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Cunfang ZhangState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Rigui YiState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Weilin NiState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China.
Fei TianKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, 810001, China.
Kai ZhaoKey Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, 810001, China.
Delin QiState Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, 810016, China. delinqi@126.com.
Qinghai University · CNXinjiang Institute of Ecology and Geography · CN

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31960127QingHai Department of Science and Technology (Bureau of Science and Technology of Qinghai Province) 2020-ZJ-907
6 · The paper itself

Abstract

Gymnocypris eckloni is widely distributed in isolated lakes and the upper reaches of the Yellow River and play significant roles in the trophic web of freshwater communities. In this study, we generated a chromosome-level genome of G. eckloni using PacBio, Illumina and Hi-C sequencing data. The genome consists of 23 pseudo-chromosomes that contain 918.68 Mb of sequence, with a scaffold N50 length of 43.54 Mb. In total, 23,157 genes were annotated, representing 94.80% of the total predicted protein-coding genes. The phylogenetic analysis showed that G. eckloni was most closely related to C. carpio with an estimated divergence time of ~34.8 million years ago. For G. eckloni, we identified a high-quality genome at the chromosome level. This genome will serve as a valuable genomic resource for future research on the evolution and ecology of the schizothoracine fish in the Qinghai-Tibetan Plateau.

Indexed as

ChromosomesCyprinidaeGenomeAnimalsPhylogenySequence Analysis, DNA

Identifiers

PMID35918339
PMCPMC9346132
OpenAlexW4289523468

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.